G52299


Basic Information

Item Value
gene id G52299
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 15076296 ~ 15084568 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70552
caccagtaagagcagagtgtgaaggttcaattagcagggtaagagcacagttctgctctaaatattgcaatgcacacaacattatgggtgacataccagagttcaaaagaggacaaattgttggtgcacgtcttgctgccgcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacagtatccagggtaatgtcagcatgtcACCACCGAGAAGGACCaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacacaaaaccacggctgatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcaccacaataaattattgtgctctaaaaccaggtgtttcagtttcattgtccaacccctgta

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70552 True 459 TUCP 0.46 2 15076296 15084568

Neighbor

gene id symbol gene type direction distance location
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding downstream 302869 14560028 ~ 14773427 (-)
LOC107197797 NA coding downstream 551030 14506734 ~ 14525266 (-)
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding downstream 688237 14355158 ~ 14388059 (-)
sh3gl1 sh3gl1,sh3gl1b,LOC107700047,LOC107717567,LOC108265290 coding downstream 727292 14301143 ~ 14349004 (-)
LOC103033235 NA coding downstream 799633 14255068 ~ 14276663 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding upstream 25704 15110272 ~ 15128265 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding upstream 210432 15295000 ~ 15355710 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding upstream 834902 15919470 ~ 15973008 (-)
LOC103030780 LOC108430129 coding upstream 896065 15980633 ~ 16035096 (-)
neurl4 neurl4 coding upstream 1001598 16086166 ~ 16129376 (-)
G52271 NA non-coding downstream 36735 15039318 ~ 15039561 (-)
G52252 NA non-coding downstream 151918 14923295 ~ 14924378 (-)
G52250 NA non-coding downstream 157444 14918403 ~ 14918852 (-)
G52235 NA non-coding downstream 255185 14820912 ~ 14821111 (-)
G52233 NA non-coding downstream 260546 14785411 ~ 14815750 (-)
G52304 NA non-coding upstream 29599 15114167 ~ 15169999 (-)
G52350 NA non-coding upstream 322417 15406985 ~ 15432449 (-)
G52366 NA non-coding upstream 559278 15643846 ~ 15657440 (-)
G52387 NA non-coding upstream 740760 15825328 ~ 15825584 (-)
G52389 NA non-coding upstream 749007 15833575 ~ 15833849 (-)
G52161 NA other downstream 664685 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 1412182 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 1483349 13565998 ~ 13592947 (-)
smim24 NA other downstream 1752613 13285303 ~ 13323683 (-)
LOC103042573 cunh1orf21,zgc:92140,LOC107676598,LOC107585858,LOC107750760,LOC107700167 other downstream 3194355 11831802 ~ 11881941 (-)
LOC103028883 LOC108430093 other upstream 1077072 16161640 ~ 16219847 (-)
G52493 NA other upstream 1098167 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 1141668 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 1259188 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 1322151 16406719 ~ 16427613 (-)

Expression


Co-expression Network