G52366


Basic Information

Item Value
gene id G52366
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 15643846 ~ 15657440 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70621
tttaaatgcaacagctagtgtaacctctgcttatattgtacaatttttatatccccacagaattcggtttttaaaacgttattcagctctattcaaaaaaggtgtggttattgtaaaaaggctggttatgggcgggaccaataacagaccgtcagctccgctccgccccgccctgcagcctgtgacctcgacgcagccctcaggggcggggttatttaaatgaatag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70621 True 227 lncRNA 0.45 2 15643846 15657440

Neighbor

gene id symbol gene type direction distance location
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 288136 15295000 ~ 15355710 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding downstream 515581 15110272 ~ 15128265 (-)
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding downstream 870419 14560028 ~ 14773427 (-)
LOC107197797 NA coding downstream 1118580 14506734 ~ 14525266 (-)
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding downstream 1255787 14355158 ~ 14388059 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding upstream 262030 15919470 ~ 15973008 (-)
LOC103030780 LOC108430129 coding upstream 323193 15980633 ~ 16035096 (-)
neurl4 neurl4 coding upstream 428726 16086166 ~ 16129376 (-)
shbg NA coding upstream 483230 16140670 ~ 16159716 (-)
LOC103032046 NA coding upstream 706173 16363613 ~ 16374341 (-)
G52350 NA non-coding downstream 211397 15406985 ~ 15432449 (-)
G52304 NA non-coding downstream 473847 15114167 ~ 15169999 (-)
G52271 NA non-coding downstream 604285 15039318 ~ 15039561 (-)
G52252 NA non-coding downstream 719468 14923295 ~ 14924378 (-)
G52250 NA non-coding downstream 724994 14918403 ~ 14918852 (-)
G52387 NA non-coding upstream 167888 15825328 ~ 15825584 (-)
G52389 NA non-coding upstream 176135 15833575 ~ 15833849 (-)
G52415 NA non-coding upstream 254615 15912055 ~ 15916878 (-)
G52418 NA non-coding upstream 266796 15924236 ~ 15928620 (-)
G52470 NA non-coding upstream 322033 15979473 ~ 15979731 (-)
G52299 NA other downstream 559278 15076296 ~ 15084568 (-)
G52161 NA other downstream 1232235 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 1979732 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 2050899 13565998 ~ 13592947 (-)
smim24 NA other downstream 2320163 13285303 ~ 13323683 (-)
LOC103028883 LOC108430093 other upstream 504200 16161640 ~ 16219847 (-)
G52493 NA other upstream 525295 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 568796 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 686316 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 749279 16406719 ~ 16427613 (-)

Expression


Co-expression Network