G52389


Basic Information

Item Value
gene id G52389
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 15833575 ~ 15833849 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70648
cagcggtctaatgagctgccactatgagcaggaggtcgcaggttcgaacccccgctcatgcagctttgccatcaagctgccagcgctcagagggagcaaaattggccctgctccctccgggtgggtagatggcgctctctccacaTCACACTTAAAGGTGGTGCATCTGTaagcggatgaatcggaaccgagtcgctgtgctttaaTCCGAGCATGCTAGATCGTCCTCTGACCGTgcgcatcctccaagggtcgcaggtgccaccggtgatggg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70648 True 275 lncRNA 0.59 1 15833575 15833849

Neighbor

gene id symbol gene type direction distance location
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 477865 15295000 ~ 15355710 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding downstream 705310 15110272 ~ 15128265 (-)
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding downstream 1060148 14560028 ~ 14773427 (-)
LOC107197797 NA coding downstream 1308309 14506734 ~ 14525266 (-)
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding downstream 1445516 14355158 ~ 14388059 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding upstream 85621 15919470 ~ 15973008 (-)
LOC103030780 LOC108430129 coding upstream 146784 15980633 ~ 16035096 (-)
neurl4 neurl4 coding upstream 252317 16086166 ~ 16129376 (-)
shbg NA coding upstream 306821 16140670 ~ 16159716 (-)
LOC103032046 NA coding upstream 529764 16363613 ~ 16374341 (-)
G52387 NA non-coding downstream 7991 15825328 ~ 15825584 (-)
G52366 NA non-coding downstream 176135 15643846 ~ 15657440 (-)
G52350 NA non-coding downstream 401126 15406985 ~ 15432449 (-)
G52304 NA non-coding downstream 663576 15114167 ~ 15169999 (-)
G52271 NA non-coding downstream 794014 15039318 ~ 15039561 (-)
G52415 NA non-coding upstream 78206 15912055 ~ 15916878 (-)
G52418 NA non-coding upstream 90387 15924236 ~ 15928620 (-)
G52470 NA non-coding upstream 145624 15979473 ~ 15979731 (-)
G52474 NA non-coding upstream 247386 16081235 ~ 16082892 (-)
G52492 NA non-coding upstream 345670 16179519 ~ 16180002 (-)
G52299 NA other downstream 749007 15076296 ~ 15084568 (-)
G52161 NA other downstream 1421964 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 2169461 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 2240628 13565998 ~ 13592947 (-)
smim24 NA other downstream 2509892 13285303 ~ 13323683 (-)
LOC103028883 LOC108430093 other upstream 327791 16161640 ~ 16219847 (-)
G52493 NA other upstream 348886 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 392387 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 509907 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 572870 16406719 ~ 16427613 (-)

Expression


Co-expression Network