G52415


Basic Information

Item Value
gene id G52415
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 15912055 ~ 15916878 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70674
attcaaattcaaatctcAACGGATTAAATAACGGATCAGCGCGAGCCCCGGCCAACTGTCATTTAaacctagcttagctaacgggaaatgtgtgttaaaaacagacattattcctatttttagctattaatgATGTTTTTACTCGCTCCTTCTACTGATGGATTCAGTTTAAATTGGTTTACAGCGTCTAGGCAACGTTTAGATTACTCTGTCACTTTCTGTCAAGtGATTTTGAGTAAATCACTATCAGGAATCTTGAAGATCTACTGTCCTGGAGTCTATAGCTCCAACCATCTTTAACTCCAACTCCATCTTCAGAAGTTCAGAGATGTTCAGTTCCTGGATCAGCTGTGCTGCATTAGAATGAGG
>TU70675
attcaaattcaaatctcAACGGATTAAATAACGGATCAGCGCGAGCCCCGGCCAACTGTCATTTAaacctagcttagctaacgggaaatgtgtgttaaaaacagacattattcctatttttagctattaatgATGTTTTTACTCGCTCCTTCTACTGATGGATTCAGTTTAAATTGGTTTACAGCGTCTAGGCAACGTTTAGATTACTCTGTCACTTTCTGTCAAGtGATTTTGAGTAAATCACTATCAGGAATCTTGAAGATCTACTGTCCTGGAGTCTATAGCTCCAACCATCTTTAACTCCAACTCCATCTTCAGAAGTTCAGAGATGTTCAGTTCCTGGATCAGCTGTGCTGCATTAGAATGAGGTGTTATAGATGCCGCAGCTTCCTGGGCTGCAGACTGACGCAAGTGCTGAAATGACAGTTTAGACGCAGACAT

Function

GO:

id name namespace
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0034587 piRNA metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process

KEGG:

id description
ko03440 Homologous recombination
ko03460 Fanconi anemia pathway

RNA

RNA id representative length rna type GC content exon number start site end site
TU70674 False 369 lncRNA 0.39 2 15913929 15916878
TU70675 True 441 lncRNA 0.41 3 15912055 15916878

Neighbor

gene id symbol gene type direction distance location
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 556345 15295000 ~ 15355710 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding downstream 783790 15110272 ~ 15128265 (-)
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding downstream 1138628 14560028 ~ 14773427 (-)
LOC107197797 NA coding downstream 1386789 14506734 ~ 14525266 (-)
LOC103032914 LOC108444319,LOC107657922,LOC107717565,LOC107585851,LOC107750669,LOC107548667 coding downstream 1523996 14355158 ~ 14388059 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding upstream 2592 15919470 ~ 15973008 (-)
LOC103030780 LOC108430129 coding upstream 63755 15980633 ~ 16035096 (-)
neurl4 neurl4 coding upstream 169288 16086166 ~ 16129376 (-)
shbg NA coding upstream 223792 16140670 ~ 16159716 (-)
LOC103032046 NA coding upstream 446735 16363613 ~ 16374341 (-)
G52389 NA non-coding downstream 78206 15833575 ~ 15833849 (-)
G52387 NA non-coding downstream 86471 15825328 ~ 15825584 (-)
G52366 NA non-coding downstream 254615 15643846 ~ 15657440 (-)
G52350 NA non-coding downstream 479606 15406985 ~ 15432449 (-)
G52304 NA non-coding downstream 742056 15114167 ~ 15169999 (-)
G52418 NA non-coding upstream 7358 15924236 ~ 15928620 (-)
G52470 NA non-coding upstream 62595 15979473 ~ 15979731 (-)
G52474 NA non-coding upstream 164357 16081235 ~ 16082892 (-)
G52492 NA non-coding upstream 262641 16179519 ~ 16180002 (-)
G52494 NA non-coding upstream 271373 16188251 ~ 16190647 (-)
G52299 NA other downstream 827487 15076296 ~ 15084568 (-)
G52161 NA other downstream 1500444 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 2247941 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 2319108 13565998 ~ 13592947 (-)
smim24 NA other downstream 2588372 13285303 ~ 13323683 (-)
LOC103028883 LOC108430093 other upstream 244762 16161640 ~ 16219847 (-)
G52493 NA other upstream 265857 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 309358 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 426878 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 489841 16406719 ~ 16427613 (-)

Expression


Co-expression Network