G52474


Basic Information

Item Value
gene id G52474
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16081235 ~ 16082892 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70762
gggGGAATAGAATCTGAATAGAATTGCATTAatggcagcaaaaaaaaaaagaatccgaGCTCATATTGATGATCATATTgcactgtaatctgtaatcTAAACTGGAATATCACGCTAGGTCTAATTATATTAGTAACTTACAGTAATTCAGACTTATCAATACCTCTTCTACCAAAAGCCAATTCTTTTGGAACTCCTCGAAGGTGCAAGGGAGCCGTACACGCGAATAtattactgagagagagactgcgTTTTAGGGCCTCTGTTAAAACggaataaaaacagtaaactatataaataaagaataaatagaatgaagaataaagatgtaaaatattaagaaaaagttgCACACTATGGCATttcgagaataaagttgtaatattctCGAATAAAGTCGTATTATTCTCAAACACGTGATATTCGCACACAAAGTCGTAATATTcttgaataaaatcataatacttcataaagttgtaataaTTTGGGAAAGTTGTTCACGATGGCAACGCAAGGATAAAGTCATAATATGTCAAAAAATAAAGTAGCAATACTTTGAGAAAAAAGTCGTAATATTCTGAAATAAGGCTGTAATATTGACTCAGATAAAGTTATTATATTTCAAaagtaaagttgtaatattttgagaaagttGTACACTATGGCAACGCAAGAATAAAGTCTTATGTCAAAAGTTCAATACTCTGAGAAAAAAAGTCGTAATATTCTAAAGAACAGTCGTAATATTCtcgaataaagtcgtaatattctcgaataaagttgtaatattctcgaataaagtcgtaatattctCGAATAAAGTCGCAATATTCtcgaataaagtcgtaatattctcaaataaagtcgtaatattctcgaataaagtcgtaatattctcgaataaagtcgtaatattccTTTGAGAATAAAGTTGCAATACTTTTTATAAAACAGTTGAACACTAAGGCATTTTGAGAATGAAGTCGCAATATTTAGAGAAATGGTCGTGATACATTTTGAGAATAATAATAGTGAGTCTTAATAATTTTAGAATAATCATAACTCTTAATCATAATTCTCCAGAATAAGTcataataaaaagtcattttagcACTCTTATAGATGCTGATGGGCCAGGAGAATTAATATTACTGTACTGGTGAAATCATCTGATATGACACGTTTAAGAGAAGAGGCTGCTATGCTACTTTGATAAACCCCTTTGGTTATAATATTGTGACTTCCTGGTAGCAATACAACTTTAATATcctaatattatgact
>TU70764
gggGGAATAGAATCTGAATAGAATTGCATTAatggcagcaaaaaaaaaaagaatccgaGCTCATATTGATGATCATATTgcactgtaatctgtaatcTAAACTGGAATATCACGCTAGGTCTAATTATATTAGTAACTTACAGTAATTCAGACTTATCAATACCTCTTCTACCAAAAGCCAATTCTTTTGGAACTCCTCGAAGGTGCAAGGGAGCCGTACACGCGAATAtattactgagagagagactgcgTTTTAGGGCCTCTGTTAAAACggaataaaaacagtaaactatataaataaagaataaatagaatgaagaataaagatgtaaaatattaagaaaaagttgCACACTATGGCATttcgagaataaagttgtaatattctCGAATAAAGTCGTATTATTCTCAAACACGTGATATTCGCACACAAAGTCGTAATATTcttgaataaaatcataatacttcataaagttgtaataaTTTGGGAAAGTTGTTCACGATGGCAACGCAAGGATAAAGTCATAATATGTCAAAAAATAAAGTAGCAATACTTTGAGAAAAAAGTCGTAATATTCTGAAATAAGGCTGTAATATTGACTCAGATAAAGTTATTATATTTCAAaagtaaagttgtaatattttgagaaagttGTACACTATGGCAACGCAAGAATAAAGTCTTATGTCAAAAGTTCAATACTCTGAGAAAAAAAGTCGTAATATTCTAAAGAACAGTCGTAATATTCtcgaataaagtcgtaatattctcgaataaagtcgtaatattctcgaataaagtcgtaatattctcgaataaagtcgtaatattctacgaataaagtcgtaatattctCGAATAAAGTCGCAATATTCtcgaataaagtcgtaatattctcaaataaagtcgtaatattctcgaataaagtcgtaatattctcgaataaagtcgtaatattccTTTGAGAATAAAGTTGCAATACTTTTTATAAAACAGTTGAACACTAAGGCATTTTGAGAATGAAGTCGCAATATTTAGAGAAATGGTCGTGATACATTTTGAGAATAATAATAGTGAGTCTTAATAATTTTAGAATAATCATAACTCTTAATCATAATTCTCCAGAATAAGTcataataaaaagtcattttagcACTCTTATAGATGCTGATGGGCCAGGAGAATTAATATTACTGTACTGGTGAAATCATCTGATATGACACGTTTAAGAGAAGAGGCTGCTATGCTACTTTGATAAACCCCTTTGGTTATAATATTGTGACTTCCTGGTAGCAATACAACTTTAATATcctaatattatgact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70762 False 1283 lncRNA 0.30 2 16081235 16082892
TU70764 True 1326 lncRNA 0.30 2 16081235 16082892

Neighbor

gene id symbol gene type direction distance location
LOC103030780 LOC108430129 coding downstream 46139 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 108227 15919470 ~ 15973008 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 725525 15295000 ~ 15355710 (-)
LOC103046390 LOC108414874,LOC108265648,LOC107679757,LOC107711941,LOC107717540,LOC107591757 coding downstream 952970 15110272 ~ 15128265 (-)
LOC103032692 kcnd3,LOC107556323,LOC107669639,LOC107711847 coding downstream 1307808 14560028 ~ 14773427 (-)
neurl4 neurl4 coding upstream 3274 16086166 ~ 16129376 (-)
shbg NA coding upstream 57778 16140670 ~ 16159716 (-)
LOC103032046 NA coding upstream 280721 16363613 ~ 16374341 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 739355 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 1106923 17189815 ~ 17464293 (-)
G52470 NA non-coding downstream 101504 15979473 ~ 15979731 (-)
G52418 NA non-coding downstream 152615 15924236 ~ 15928620 (-)
G52415 NA non-coding downstream 164357 15912055 ~ 15916878 (-)
G52389 NA non-coding downstream 247386 15833575 ~ 15833849 (-)
G52387 NA non-coding downstream 255651 15825328 ~ 15825584 (-)
G52492 NA non-coding upstream 96627 16179519 ~ 16180002 (-)
G52494 NA non-coding upstream 105359 16188251 ~ 16190647 (-)
G52496 NA non-coding upstream 117317 16200209 ~ 16200712 (-)
G52505 NA non-coding upstream 143941 16226833 ~ 16249333 (-)
G52507 polr2a non-coding upstream 153317 16236209 ~ 16238086 (-)
G52299 NA other downstream 996667 15076296 ~ 15084568 (-)
G52161 NA other downstream 1669624 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 2417121 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 2488288 13565998 ~ 13592947 (-)
smim24 NA other downstream 2757552 13285303 ~ 13323683 (-)
LOC103028883 LOC108430093 other upstream 78748 16161640 ~ 16219847 (-)
G52493 NA other upstream 99843 16182735 ~ 16185312 (-)
G52503 polr2a other upstream 143344 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 260864 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 323827 16406719 ~ 16427613 (-)

Expression


Co-expression Network