G52493


Basic Information

Item Value
gene id G52493
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16182735 ~ 16185312 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70793
cgatgtgtccaaacttttgactggtgctgtatgaCAGGACAGCATGAAAGGGTATAACATCGTATTTGGGACATCATATATCTGTATAAGCCAAGTTAACCCTTCACTGCATTTAGAACTAAACACAAACATGAGGAAACAACGAAACAACTAAAGTAAAGTCAATGCagttaataactgttatttatgctttttaaaaGCATATCCTAACttgtttatattacattaatttacattattttcaaattacatgataaatggaccaacatAAATGCTCAAAACTGACAAAGCATACAATCTATTTATtgaaaatgtactgtataaCTTAACATTATCACAGGGACAGATGACAGGAATCACTTGCTGAGCTGCAACCAAGCAAATCAAGGCCCAGTCccattttgtatttgtattccTAGCTCTGGTTTTCAAGTGTTATCTAGCTAGCAGCTACTAGCAGTGCTctatctacccctctatcccaacaagaatcgggaAACTCTACCCCtttatcccaacaacaagattCAGAACACCCTAccactctatcccaacaacaagaatcagaacaccatacccctctatcccaacaacaagaatcaggagacccaacccctctatcccaacaacaagaatcagaacaccctacccctctatcccaacaacaagaatcagaacaccctacccctctatcccaacaacactctacccctctatcccaacaacaaaaatcaggacactctacccctctatcccaacaataaGAATTaaaacaccctacccctctatcccaacaagaatcaggacaccttACCCCTTTATCCAtacaagaatcaaaacattctagccctctatcccaacaagaaatGGGACACTTTACCTCTCTATCTCAACAAGAATCaaaacaccctacccctctatgccaacaagaattgggacaccctaaccctctatcccaacaagaatcaaaacaccatacccctctatcccaacaagaatcgtgaaactctacccctctatccaacaagaatcaaaacaccatacccctctatcccaacaagaatcaaaacaccctacccctctatcccaacaagaatcaggaaaCTCTAccgctctatcccaacaagaatcaaaacaccataccactctatcccaacaacaAGAATCaaaacaccctacccctctgtcCCAACAAGAAATTGGGACagtctacccctctatccaaatTAGAATCAAAACACCATACCtatctatcccaacaagaatcaaaagACCATACCCCTCTATACAAGCAAAAAatgggacaccctacccctcttcAGAACACCCTACCAATCTTGACAAGAATTGGAACACCCTTCCCGTCCATCTTATCAAGAATCAAAAAACCctatccctctatcccaacaaaaatCAAGAGAGCCTACCCAtttatcccaacaacaagaatcaggacactctacccctctattccAACAACAAGGATCAAAACACTATCCCCCTCTATCCAAACTAGAATCAAAACATCATAcctctctatcccaacaagaaacgggacaccctacccctctacaGAACACCCTACCAATCTATTTcgacaagaattgggacaccctacACCTCTATCCCAACCAGAATTGAGAAACTCTACCgctctatcccaacaaaaaACCCTACCGTTAGGTGTGCACAAAACTGAGGgttagggctaagtggtaggggcaaagggtgaaatgggactgggcTTAAGCATGGCGTTTAACATGAGCACAGTCACTAGAGCACGACTCCTCATAGAACAGAAAGAAGATACGCCACATTCTGCAGAGGGAAAGTGCTGGCTGTATAAACGTTCTGCTTCTCAGCACTTTCGAGATGCAGAGGAGTGGAAGCAGCAGGACTGCACTGGAAACCACCGCTACCTCTATACCCCTCCATACCTCCCGCCTCCTCCCACTCGCCCCTCATACAAGCGCTGTACTGCTTTTCACCGTCTCTTCTCACCTCCCCTCCCCTTCCCTTCCCTCTGGCTGCCTCAGCCGTGTTTTTTTGGCCAGGGGGTTGTGCAGAGTTCAGGATCTAGTGACAGCCCTCTTTTCACAGTCCGGCTGAGGCCGGTGGGCCCTGTCGCAGGCCGCATGGAAAGCAGTGGCCTCCATACCCGATTCTAGCgccagtcagtcagtctgcTCCGATTCCTCCACTAACACTGCCAAATGGAAACACTTTAACCCCTCACGCCACATACGCTGCTCTCTAATCAGCTTGGACTTGTAACACTAATACTGTGGGTGGAGCATGTCGATGCTGTcaggcaaaaaaatatatatatattttttgtactttttgacataattagACTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70793 True 2363 TUCP 0.44 4 16182735 16185312

Neighbor

gene id symbol gene type direction distance location
shbg NA coding downstream 23019 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 53359 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 147639 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 209727 15919470 ~ 15973008 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 827025 15295000 ~ 15355710 (-)
LOC103032046 NA coding upstream 178301 16363613 ~ 16374341 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 636935 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 1004503 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1282739 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1463139 17648451 ~ 17665261 (-)
G52492 NA non-coding downstream 2733 16179519 ~ 16180002 (-)
G52474 NA non-coding downstream 99843 16081235 ~ 16082892 (-)
G52470 NA non-coding downstream 203004 15979473 ~ 15979731 (-)
G52418 NA non-coding downstream 254115 15924236 ~ 15928620 (-)
G52415 NA non-coding downstream 265857 15912055 ~ 15916878 (-)
G52494 NA non-coding upstream 2939 16188251 ~ 16190647 (-)
G52496 NA non-coding upstream 14897 16200209 ~ 16200712 (-)
G52505 NA non-coding upstream 41521 16226833 ~ 16249333 (-)
G52507 polr2a non-coding upstream 50897 16236209 ~ 16238086 (-)
G52506 polr2a,LOC102798520 non-coding upstream 54762 16240074 ~ 16240632 (-)
G52299 NA other downstream 1098167 15076296 ~ 15084568 (-)
G52161 NA other downstream 1771124 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 2518621 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 2589788 13565998 ~ 13592947 (-)
smim24 NA other downstream 2859052 13285303 ~ 13323683 (-)
G52503 polr2a other upstream 40924 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 158444 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 221407 16406719 ~ 16427613 (-)
G52652 NA other upstream 402838 16588150 ~ 16589783 (-)
G53164 NA other upstream 2401089 18586401 ~ 18667287 (-)

Expression


Co-expression Network