G52494


Basic Information

Item Value
gene id G52494
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16188251 ~ 16190647 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70794
ACAAGGCCTGCCTCCCTTATCCTCTCCTCTTGTGGCTGAACCACGCAGTTCTTTTTCAGGGCCGATGAGTCGCTCACATAGAATGAAACTGGcctgaaaagaagagaaaagatgcTTTTAAGATTTTTACATGTTTGCAGGTTTAAATGTTTACAGGTTTACTGTGAATGTGGCACTCTGGGGTATTTCTGAAGCGTTACGGAAATTACAGAAATTAAATGGCATGGCTGGAAGTGGGCAAGTTTGGTTTTAGTaagcaaaaatgtttaaaagattTAAGAAAAGAATGATCATGTTTGTCATTTCCAGGACATGCAACTAAAATTAACTAATATTCActattatttatcatatttctcATCATCttatctgtattattttttaacatcagAAATATTCATGATGCCTAAAGGCCACAGAACTCAGACTGATAGGAATCATGACCAAGCATTCAGCAGTTTGCCCTTTTAGTGTTACGAAATGTTGTAATGGGTGTGGGTTTGGGTTTTTACTGAATTCTTAGTCACTTGGACTCTGTCACTGTATTGTTTTGGGTTTTTCTGCAGTATATAGATTCGACAACATATGGTTCTCTATAATTTTCATGTAACATGCATGCTAAAACTCAAATGAGGGATATATGTTCTCTAGATCTCTAAATTACTGCATTTTAAATAAGATTATACTATGTTATTCCTTACTTCTGTGACAGCTCGAAGACAAGCtcagtcaaaaatacaaaatgaacaataaaattACCTACCTACTTTAGTTGTTTCCTTAAGATTGCATTCACTTTTACATTTCCTGAGGTTTAACTTACATAGAGGCCAGctatactatataaatatatacagctctggaaaaaaataagagaccacttaaaaaattattatgcatttttctttgattttaccaaattgaaaacctctagaatataatcaagaggttgatgatcacaagccatcaaactaaactgaactgcttttggataaatttatgcctttactactacttttccagagctgtatacgccatgttaaccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70794 True 1047 lncRNA 0.34 2 16188251 16190647

Neighbor

gene id symbol gene type direction distance location
shbg NA coding downstream 28535 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 58875 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 153155 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 215243 15919470 ~ 15973008 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 832541 15295000 ~ 15355710 (-)
LOC103032046 NA coding upstream 172966 16363613 ~ 16374341 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 631600 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 999168 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1277404 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1457804 17648451 ~ 17665261 (-)
G52492 NA non-coding downstream 8249 16179519 ~ 16180002 (-)
G52474 NA non-coding downstream 105359 16081235 ~ 16082892 (-)
G52470 NA non-coding downstream 208520 15979473 ~ 15979731 (-)
G52418 NA non-coding downstream 259631 15924236 ~ 15928620 (-)
G52415 NA non-coding downstream 271373 15912055 ~ 15916878 (-)
G52496 NA non-coding upstream 9562 16200209 ~ 16200712 (-)
G52505 NA non-coding upstream 36186 16226833 ~ 16249333 (-)
G52507 polr2a non-coding upstream 45562 16236209 ~ 16238086 (-)
G52506 polr2a,LOC102798520 non-coding upstream 49427 16240074 ~ 16240632 (-)
G52510 NA non-coding upstream 59360 16250007 ~ 16250234 (-)
G52493 NA other downstream 2939 16182735 ~ 16185312 (-)
G52299 NA other downstream 1103683 15076296 ~ 15084568 (-)
G52161 NA other downstream 1776640 14408936 ~ 14411611 (-)
G51960 glis1 other downstream 2524137 13663401 ~ 13664114 (-)
LOC111192615 ssbp3b,LOC108439398,LOC108265320,LOC107585824,LOC107699856,LOC107710925,LOC107657912 other downstream 2595304 13565998 ~ 13592947 (-)
G52503 polr2a other upstream 35589 16226236 ~ 16227174 (-)
LOC111192725 NA other upstream 153109 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 216072 16406719 ~ 16427613 (-)
G52652 NA other upstream 397503 16588150 ~ 16589783 (-)
G53164 NA other upstream 2395754 18586401 ~ 18667287 (-)

Expression


Co-expression Network