G52543


Basic Information

Item Value
gene id G52543
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16261118 ~ 16289545 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70856
cacagtggatcaacaccagcagatgacatgtctctccaaaccatcactgattggtggaaacttcacactagacctcgagcagtttggatgggtgtctctccactcttcctccagactctgatcccttgatttcctttaaatgaaatgtaaaatttactgatgatcagtgatggtttggagagacatgtctgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcagtgcagttttgttttcccacaaaatcttacagcacttcatatcttacagcttccctctgctactgacaacttttatggagatgcagatttcattttccagcaggacttggcacac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70856 True 355 lncRNA 0.42 2 16261118 16289545

Neighbor

gene id symbol gene type direction distance location
shbg NA coding downstream 101402 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 131742 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 226022 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 288110 15919470 ~ 15973008 (-)
LOC103031338 rhoc,LOC108427591,LOC105908082,LOC107729745,LOC103035456,LOC108271788,LOC107668165,LOC105902219 coding downstream 905408 15295000 ~ 15355710 (-)
LOC103032046 NA coding upstream 74068 16363613 ~ 16374341 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 532702 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 900270 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1178506 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1358906 17648451 ~ 17665261 (-)
G52542 NA non-coding downstream 5640 16255142 ~ 16255478 (-)
G52510 NA non-coding downstream 10884 16250007 ~ 16250234 (-)
G52505 NA non-coding downstream 11785 16226833 ~ 16249333 (-)
G52506 polr2a,LOC102798520 non-coding downstream 20486 16240074 ~ 16240632 (-)
G52507 polr2a non-coding downstream 23032 16236209 ~ 16238086 (-)
G52538 NA non-coding upstream 2871 16292416 ~ 16339967 (-)
G52547 NA non-coding upstream 6465 16296010 ~ 16299701 (-)
G52559 NA non-coding upstream 85602 16375147 ~ 16376685 (-)
G52560 NA non-coding upstream 87454 16376999 ~ 16378858 (-)
G52565 mfsd8 non-coding upstream 108653 16398198 ~ 16402965 (-)
G52503 polr2a other downstream 33944 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 41271 16161640 ~ 16219847 (-)
G52493 NA other downstream 75806 16182735 ~ 16185312 (-)
G52299 NA other downstream 1176550 15076296 ~ 15084568 (-)
G52161 NA other downstream 1849507 14408936 ~ 14411611 (-)
LOC111192725 NA other upstream 54211 16343756 ~ 16356960 (-)
zcchc4 NA other upstream 117174 16406719 ~ 16427613 (-)
G52652 NA other upstream 298605 16588150 ~ 16589783 (-)
G53164 NA other upstream 2296856 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 3233157 19522702 ~ 19570378 (-)

Expression


Co-expression Network