G52559


Basic Information

Item Value
gene id G52559
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16375147 ~ 16376685 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70877
ttgcaGTCGGAATGTGAATCAAGTTATGGCCTACATTtattgtataaaaatattcatatgTTTTGAATTAGATATCATCTATACTCTTGAACAATATGTGTTGTCAtttgtaaaagtaattttattatCCTGTGTGCTTTTGAAGATGCATGTAACTAATAAGGTTATGTTTGTACCATCttcaatataaaagctgcatgtatctatctaatatttgggtgaaataaacattaaaaggtGTAAGTAGTCAGCtaaattggtaatatttgggtgaaataagcctttaaataTGTAAGTTGTTAGCTAAAGtggtgatattatttaaggtgTAGTAAGTCGTTCATTTCGTTAGGTGGCAGTGTCGCAAAAAATAGGGTCCTAGAATTGCGGTCCTGAAACTGCGGGGTCCTGAAACTGCAGTCTCCGGGGTTGCAGCTATATGTAATTTCGCCTGCAGGTGGCGCCAGTGGACTTTCTCACAATAGTAGTATTATAGATATAGAGATAATAGAGAGatattatagatgtattata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70877 True 534 lncRNA 0.34 2 16375147 16376685

Neighbor

gene id symbol gene type direction distance location
LOC103032046 NA coding downstream 806 16363613 ~ 16374341 (-)
shbg NA coding downstream 215431 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 245771 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 340051 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 402139 15919470 ~ 15973008 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 445562 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 813130 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 1091366 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1271766 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 1291979 17668664 ~ 17669725 (-)
G52538 NA non-coding downstream 35180 16292416 ~ 16339967 (-)
G52547 NA non-coding downstream 75446 16296010 ~ 16299701 (-)
G52540 LOC107584402,LOC108430072,LOC107733451,LOC107657288,LOC107738984,LOC107556576 non-coding downstream 82075 16285052 ~ 16293072 (-)
G52543 NA non-coding downstream 85602 16261118 ~ 16289545 (-)
G52542 NA non-coding downstream 119669 16255142 ~ 16255478 (-)
G52560 NA non-coding upstream 314 16376999 ~ 16378858 (-)
G52565 mfsd8 non-coding upstream 21513 16398198 ~ 16402965 (-)
G52654 NA non-coding upstream 218486 16595171 ~ 16651572 (-)
G52655 NA non-coding upstream 246064 16622749 ~ 16677399 (-)
G52662 NA non-coding upstream 301402 16678087 ~ 16765190 (-)
LOC111192725 NA other downstream 18187 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 147973 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 155300 16161640 ~ 16219847 (-)
G52493 NA other downstream 189835 16182735 ~ 16185312 (-)
G52299 NA other downstream 1290579 15076296 ~ 15084568 (-)
zcchc4 NA other upstream 30034 16406719 ~ 16427613 (-)
G52652 NA other upstream 211465 16588150 ~ 16589783 (-)
G53164 NA other upstream 2209716 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 3146017 19522702 ~ 19570378 (-)
G53382 NA other upstream 3473265 19849950 ~ 19850350 (-)

Expression


Co-expression Network