G52652


Basic Information

Item Value
gene id G52652
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16588150 ~ 16589783 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU70997
ctGTCACGCCGCCTCGTTCTCCTTCCACAttaccggactccatttcccagaatcctgTTGATTATGACACCAACAGTATCCGTTCTACTTCACCCAATCACATTtcgctccgacgctctgattcacctgtgttctgagttagTTCCGGTTCATACCCATCTAGCTCCGGTATTTAAGTCTGCAgtatgtaaacaaacaccgcgaggtattgttAACTtatgttgcatactaagcgttaTCCTATTGTTTCTCGTTTTGGCTTTATGGTTACGACTCTCTTTTTGGATTattggtttatgtcttttgtcttgcccttattggatttaTTGCATGGTTGGACTGATACGCGgttacgaactcggactgtacTTTCGACTACGTCTTTGGTTTTCGGTGAGATCTTTGTTTGCCTGGCTTTACTGTTTTCTGTTATACTGCctgttaataaacctgtttgcttattttactcggcttgcgtcactcctcactacctggcgttACAT
>TU70998
ctGTCACGCCGCCTCGTTCTCCTTCCACAttaccggactccatttcccagaatcctgTTGATTATGACACCAACAGTATCCGTTCTACTTCACCCAATCACATTtcgctccgacgctctgattcacctgtgttctgagttagTTCCGGTTCATACCCATCTAGCTCCGGTATTTAAGTCTGCAgtatgtaaacaaacaccgcgaggtattgttAACTtatgttgcatactaagcgttaTCCTATTGTTTCTCGTTTTGGCTTTATGGTTACGACTCTCTTTTTGGATTattggtttatgtcttttgtcttgcccttattggatttaTTGCATGGTTGGACTGATACGCGgttacgaactcggactgtacTTTCGACTACGTCTTTGGTTTTCGGTGAGATCTTTGTTTGCCTGGCTTTACTGTTTTCTGTTATACTGCctgttaataaacctgtttgcttattttactcggcttgcgtcactcctcactacctggcgttACAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU70997 True 503 TUCP 0.43 2 16588150 16589783
TU70998 False 503 TUCP 0.43 2 16588150 16589783

Neighbor

gene id symbol gene type direction distance location
LOC103032046 NA coding downstream 213809 16363613 ~ 16374341 (-)
shbg NA coding downstream 428434 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 458774 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 553054 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 615142 15919470 ~ 15973008 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 232464 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 600032 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 878268 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 1058668 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 1078881 17668664 ~ 17669725 (-)
G52565 mfsd8 non-coding downstream 185185 16398198 ~ 16402965 (-)
G52560 NA non-coding downstream 209292 16376999 ~ 16378858 (-)
G52559 NA non-coding downstream 211465 16375147 ~ 16376685 (-)
G52538 NA non-coding downstream 248183 16292416 ~ 16339967 (-)
G52654 NA non-coding upstream 5388 16595171 ~ 16651572 (-)
G52655 NA non-coding upstream 32966 16622749 ~ 16677399 (-)
G52662 NA non-coding upstream 88304 16678087 ~ 16765190 (-)
G52673 NA non-coding upstream 162718 16752501 ~ 16753583 (-)
G52676 NA non-coding upstream 169435 16759218 ~ 16760425 (-)
zcchc4 NA other downstream 160537 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 231190 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 360976 16226236 ~ 16227174 (-)
LOC103028883 LOC108430093 other downstream 368303 16161640 ~ 16219847 (-)
G52493 NA other downstream 402838 16182735 ~ 16185312 (-)
G53164 NA other upstream 1996618 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 2932919 19522702 ~ 19570378 (-)
G53382 NA other upstream 3260167 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 4031786 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 4193955 20783738 ~ 20787618 (-)

Expression


Co-expression Network