G52676


Basic Information

Item Value
gene id G52676
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16759218 ~ 16760425 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71032
TGAAagcaggttttattttttatgtacagCTTTTTTGTCGCCAAGTCAGCAACAGTCGATCAGCAAAATACAAGCAAGTAGAAAATCCTTAAGGTGCAAAACAAACAATTTTACCCACAATCCCCCATAATAACCCACCCTGACTCCGCCCCTTTACTCTGAAGCAATACATGTCATATTACTGTTCACATTGTTTAACTCATTCAGTCAGTAGGGGAGGGGGTGGAGCTCAAAATACTGACATAACTATTAAATTCAGCATTttatacacagcattttgatcATCTTGAAATATTTAATGGAGCAATTAATACATTTGATGAAGAGTTTTAacaatgctttttaaaataacttaagatTCTCAACTGGTAAAATTCAGACACCTGTGATGAGAAGTCGATGGACAGAAGAAAAGAAGGGCTGCACACACATGTAAGTTTAAAATCCGCAGCCTGAAATCAAAACGCTACGCCTCACTGCAGCAGAAACCAGCTTCTATGGAAAGTTGTAGATGTGCCTTAAATATAATCTGGCTGGCAGTAGTCTGTATGAATCTGTCAGTCCTTATTTCTATATTAAGCACCGAGTCTCGCTCCTTAATTTCACTGGATTAAGAGCAAAGAGCAAAAAGCACGactgaaaaaagcaccaaacTTACTGAAACACATTTACAGTGATTAGAGATGCACTGAGTgatgagctggtggtacagtgagtggatcagatacagcagagctgctggagttcttaaacactgtgttcactgacGTGGCTGACAGGACGTGACTGACAGGACATGGGCCACAGGACATGACTGACAGATGTGACCAATAGGACATAGCCCACAGATCCCGCAGGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71032 True 859 lncRNA 0.41 2 16759218 16760425

Neighbor

gene id symbol gene type direction distance location
LOC103032046 NA coding downstream 384877 16363613 ~ 16374341 (-)
shbg NA coding downstream 599502 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 629842 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 724122 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 786210 15919470 ~ 15973008 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding upstream 61822 16822247 ~ 16928239 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 429390 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 707626 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 888026 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 908239 17668664 ~ 17669725 (-)
G52673 NA non-coding downstream 5635 16752501 ~ 16753583 (-)
G52655 NA non-coding downstream 81819 16622749 ~ 16677399 (-)
G52654 NA non-coding downstream 107646 16595171 ~ 16651572 (-)
G52565 mfsd8 non-coding downstream 356253 16398198 ~ 16402965 (-)
G52560 NA non-coding downstream 380360 16376999 ~ 16378858 (-)
G52685 NA non-coding upstream 69517 16829942 ~ 16832519 (-)
G52698 NA non-coding upstream 119516 16879941 ~ 16907253 (-)
G52722 NA non-coding upstream 270288 17030713 ~ 17077954 (-)
G52724 NA non-coding upstream 309980 17070405 ~ 17074100 (-)
G52728 NA non-coding upstream 337698 17098123 ~ 17098469 (-)
G52652 NA other downstream 169435 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 331605 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 402258 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 532044 16226236 ~ 16227174 (-)
G52493 NA other downstream 573906 16182735 ~ 16185312 (-)
G53164 NA other upstream 1825976 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 2762277 19522702 ~ 19570378 (-)
G53382 NA other upstream 3089525 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 3861144 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 4023313 20783738 ~ 20787618 (-)

Expression


Co-expression Network