G52698


Basic Information

Item Value
gene id G52698
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 16879941 ~ 16907253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71057
GTTTCACATGCAAAAGAAGCAACAACAGTACCAACTTTGTACTTTAGCACTTTAGTTCTCTTATCTCATTGAAGATTCACCCAATttacagcgctggaaaaaagtgagagcacttcagtttctgaatcagtttctctgattttgctatttataggtttatgtttgagtaaaatgaacagtgttgttttattctataaactacagacaacatttctcccaaattccaaataaaaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71057 True 235 lncRNA 0.32 2 16879941 16907253

Neighbor

gene id symbol gene type direction distance location
LOC103032046 NA coding downstream 505600 16363613 ~ 16374341 (-)
shbg NA coding downstream 720225 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 750565 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 844845 15980633 ~ 16035096 (-)
LOC103030471 nsfb,LOC108430134,LOC108273757,LOC107665886,LOC107657277 coding downstream 906933 15919470 ~ 15973008 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 282562 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 560798 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 741198 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 761411 17668664 ~ 17669725 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding upstream 1674627 18581880 ~ 18610419 (-)
G52685 NA non-coding downstream 47422 16829942 ~ 16832519 (-)
G52662 NA non-coding downstream 114751 16678087 ~ 16765190 (-)
G52676 NA non-coding downstream 119516 16759218 ~ 16760425 (-)
G52673 NA non-coding downstream 126358 16752501 ~ 16753583 (-)
G52655 NA non-coding downstream 202542 16622749 ~ 16677399 (-)
G52722 NA non-coding upstream 123460 17030713 ~ 17077954 (-)
G52724 NA non-coding upstream 163152 17070405 ~ 17074100 (-)
G52728 NA non-coding upstream 190870 17098123 ~ 17098469 (-)
G52729 NA non-coding upstream 194980 17102233 ~ 17102466 (-)
G52759 NA non-coding upstream 250252 17157505 ~ 17157905 (-)
G52652 NA other downstream 290158 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 452328 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 522981 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 652767 16226236 ~ 16227174 (-)
G52493 NA other downstream 694629 16182735 ~ 16185312 (-)
G53164 NA other upstream 1679148 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 2615449 19522702 ~ 19570378 (-)
G53382 NA other upstream 2942697 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 3714316 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 3876485 20783738 ~ 20787618 (-)

Expression


Co-expression Network