G52728


Basic Information

Item Value
gene id G52728
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 17098123 ~ 17098469 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71091
TGTCAGGTCTTTAGTCTGTCTGCTTcttatgtctgtgttattctcaggtctgtgtttcattcccagtgtttttccactcacctgtgttcatttgtagctccgccccttcgtcccaggtgtttcctgtttcctgtgtgtgtgcacctctatttaaggtccgtgttccatttccccggtgtcgatccttgtacgtttatcgtctgtcagtgctccatgttttccccagtttcctcagtcctgttttcggTAGTtccctgtgtattttgtatttgtttttcgttaataaatcccattttgtttgcatttgcgtccgcctccgcgtcctccctgcacccgcacctgacagt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71091 True 347 lncRNA 0.47 1 17098123 17098469

Neighbor

gene id symbol gene type direction distance location
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding downstream 169884 16822247 ~ 16928239 (-)
LOC103032046 NA coding downstream 723782 16363613 ~ 16374341 (-)
shbg NA coding downstream 938407 16140670 ~ 16159716 (-)
neurl4 neurl4 coding downstream 968747 16086166 ~ 16129376 (-)
LOC103030780 LOC108430129 coding downstream 1063027 15980633 ~ 16035096 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding upstream 91346 17189815 ~ 17464293 (-)
LOC111192622 NA coding upstream 369582 17468051 ~ 17476591 (-)
LOC103035515 NA coding upstream 549982 17648451 ~ 17665261 (-)
LOC103035822 NA coding upstream 570195 17668664 ~ 17669725 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding upstream 1483411 18581880 ~ 18610419 (-)
G52722 NA non-coding downstream 20169 17030713 ~ 17077954 (-)
G52724 NA non-coding downstream 24023 17070405 ~ 17074100 (-)
G52698 NA non-coding downstream 190870 16879941 ~ 16907253 (-)
G52685 NA non-coding downstream 265604 16829942 ~ 16832519 (-)
G52662 NA non-coding downstream 332933 16678087 ~ 16765190 (-)
G52729 NA non-coding upstream 3764 17102233 ~ 17102466 (-)
G52759 NA non-coding upstream 59036 17157505 ~ 17157905 (-)
G52757 NA non-coding upstream 89071 17187540 ~ 17251623 (-)
G52850 NA non-coding upstream 495147 17593616 ~ 17645708 (-)
G52891 mtr,LOC107674399 non-coding upstream 677413 17775882 ~ 17791944 (-)
G52652 NA other downstream 508340 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 670510 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 741163 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 870949 16226236 ~ 16227174 (-)
G52493 NA other downstream 912811 16182735 ~ 16185312 (-)
G53164 NA other upstream 1487932 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 2424233 19522702 ~ 19570378 (-)
G53382 NA other upstream 2751481 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 3523100 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 3685269 20783738 ~ 20787618 (-)

Expression


Co-expression Network