G52891 (mtr,LOC107674399)


Basic Information

Item Value
gene id G52891
gene name mtr,LOC107674399
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 17775882 ~ 17791944 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71305
ACGCATCCAGAACATGGATCACCGGCGAGCTGTAGCGGGGGGCGATCTTCACCGCCGTGTGGGTTTTTGATGTTGTGGCTCCTCCAATCAGCAGAGGCGTCTTCAAACTCAGGCGATCCATCTCCTTCGCAACATGAATCATCTCATCCAGAGACGGCGTGATGAGACCAGACAAACCGATAACATCTGCTTTCTTCTCAATCGCCTCCTTCAGGATTCGATCACACGGTACCATCACCCCCAAATCAatcaccCGAAAGTTGTTGCATCCCAGAACGACACCCACAATGTTTTTGCCAATATCGTGAACATCTCCCTTCACCGTGGCCAGAACGATCGTACCCTGATACGGATCCGTGTCCTCGGTCTCCCCAGACGCCGCCatcatctcctctctctctttctccatgaAGGGAATTAGATACCCCACGGCCTTCTTCATCACACGAGCCGACTTTATCACCTGAGGCAGGAACATCTTTCCAGCTCCAAACAGATCACCTACAGTCTTCATCCCGTTCATCAGCGGACCCTCTATAACGTGCAGTGGACGGGGGTAACGGTCCGTCTGTGCTCGAGCCTCTTCTGTATCTTCTACTACATACTTCTCTATACCcTTAATAAGAGCGTACTCCAGTCTCTCCTCCACATTTCCTTTTCTCCACTCATCTGTCTGAATCACCTTCTTCCCTCCTTTAGCATAATTCTGAGCGTACTGCAGCAGTTTCTCTGTAGCTTCTGGGTCTTTGTTCCAGATGAGGTTCTCACACAGAACCAGCAGCTCCTTATCAATATCATCATACACCGGCAGATTTCCCGCATTCACAATCCCCATATCCATCCCTTAATAGCATGGTAGAGGAACGCTCCATGCATGGCCTCTCTGATTGCCTCCATTCCTCGGAACGAGAAGGACAGATTAGAAAGACCCCCACTGACCCGAGCTCCAGGTAACGTCTCCTTTATAATGCTGGTGGCTCTGATGAAATTGATGGCGTACATGTTGTGCTCCTCCATCCCGGTGCCTATAGTGAGGATGTTGGGATCGAAGATGATGTCATTGGGGTTAAACCCCACCTTACTGACCAGGAGGTGATAGGCTCTAGTACAGATCTGGACCTTCTGATCGATTTCAGTGGCCTGTCCTTCCTCATCGAAGGCCATGATGACGACAGCAGCTCCGTAGCGCCGCACTTGATTGGCTCGTTTGAGAaactcctcctccccctccttcAGACTGATGCTGTTAACGATGCATTTACCCTGACAGCACTTCAGCCCCGCCTCGATCACCGCGAAGTTCGACGAGTC

Function

symbol description
mtr Predicted to enable cobalamin binding activity; methionine synthase activity; and zinc ion binding activity. Predicted to act upstream of or within methionine biosynthetic process; methylation; and pteridine-containing compound metabolic process. Predicted to be located in cytoplasm and membrane. Predicted to be integral component of membrane. Is expressed in several structures, including anterior neural tube; central nervous system; digestive system; immature eye; and mesoderm. Human ortholog(s) of this gene implicated in several diseases, including IgA glomerulonephritis; autistic disorder; hematologic cancer (multiple); hyperhomocysteinemia; and methylmalonic aciduria and homocystinuria type cblG. Orthologous to human MTR (5-methyltetrahydrofolate-homocysteine methyltransferase).

NR:

description
PREDICTED: methionine synthase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71305 True 1311 lncRNA 0.51 11 17775882 17791944

Neighbor

gene id symbol gene type direction distance location
LOC103035822 NA coding downstream 106157 17668664 ~ 17669725 (-)
LOC103035515 NA coding downstream 110621 17648451 ~ 17665261 (-)
LOC111192622 NA coding downstream 299291 17468051 ~ 17476591 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding downstream 311589 17189815 ~ 17464293 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding downstream 847643 16822247 ~ 16928239 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding upstream 789936 18581880 ~ 18610419 (-)
nat9 nat9 coding upstream 852511 18644455 ~ 18648875 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding upstream 864888 18656832 ~ 18689601 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding upstream 905050 18696994 ~ 18728233 (-)
LOC111192624 LOC108430317 coding upstream 938099 18730043 ~ 18741304 (-)
G52850 NA non-coding downstream 130174 17593616 ~ 17645708 (-)
G52757 NA non-coding downstream 524259 17187540 ~ 17251623 (-)
G52759 NA non-coding downstream 617977 17157505 ~ 17157905 (-)
G52729 NA non-coding downstream 673416 17102233 ~ 17102466 (-)
G52728 NA non-coding downstream 677413 17098123 ~ 17098469 (-)
G52946 NA non-coding upstream 86863 17878807 ~ 17879433 (-)
G52947 NA non-coding upstream 117544 17909488 ~ 17910071 (-)
G52951 NA non-coding upstream 169602 17961546 ~ 18002313 (-)
G52995 NA non-coding upstream 397523 18189467 ~ 18189667 (-)
G53135 NA non-coding upstream 558328 18350272 ~ 18399148 (-)
G52652 NA other downstream 1186099 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 1348269 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 1418922 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 1548708 16226236 ~ 16227174 (-)
G52493 NA other downstream 1590570 16182735 ~ 16185312 (-)
G53164 NA other upstream 794457 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 1730758 19522702 ~ 19570378 (-)
G53382 NA other upstream 2058006 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 2829625 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 2991794 20783738 ~ 20787618 (-)

Expression


Co-expression Network