G52946


Basic Information

Item Value
gene id G52946
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 17878807 ~ 17879433 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71390
ctatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaactaccttctactaccagatcaggagaatctctcactatctttaagaaactcctgaagacagagctcttcaaagagtacttactctcctaacacctctaacacactaactacttctaaccccatttccttcttcccctccttcactc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71390 True 215 lncRNA 0.41 2 17878807 17879433

Neighbor

gene id symbol gene type direction distance location
LOC103035822 NA coding downstream 209082 17668664 ~ 17669725 (-)
LOC103035515 NA coding downstream 213546 17648451 ~ 17665261 (-)
LOC111192622 NA coding downstream 402216 17468051 ~ 17476591 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding downstream 414514 17189815 ~ 17464293 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding downstream 950568 16822247 ~ 16928239 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding upstream 702447 18581880 ~ 18610419 (-)
nat9 nat9 coding upstream 765022 18644455 ~ 18648875 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding upstream 777399 18656832 ~ 18689601 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding upstream 817561 18696994 ~ 18728233 (-)
LOC111192624 LOC108430317 coding upstream 850610 18730043 ~ 18741304 (-)
G52891 mtr,LOC107674399 non-coding downstream 86863 17775882 ~ 17791944 (-)
G52850 NA non-coding downstream 233099 17593616 ~ 17645708 (-)
G52757 NA non-coding downstream 627184 17187540 ~ 17251623 (-)
G52759 NA non-coding downstream 720902 17157505 ~ 17157905 (-)
G52729 NA non-coding downstream 776341 17102233 ~ 17102466 (-)
G52947 NA non-coding upstream 30055 17909488 ~ 17910071 (-)
G52951 NA non-coding upstream 82113 17961546 ~ 18002313 (-)
G52995 NA non-coding upstream 310034 18189467 ~ 18189667 (-)
G53135 NA non-coding upstream 470839 18350272 ~ 18399148 (-)
G53138 NA non-coding upstream 506336 18385769 ~ 18386992 (-)
G52652 NA other downstream 1289024 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 1451194 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 1521847 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 1651633 16226236 ~ 16227174 (-)
G52493 NA other downstream 1693495 16182735 ~ 16185312 (-)
G53164 NA other upstream 706968 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 1643269 19522702 ~ 19570378 (-)
G53382 NA other upstream 1970517 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 2742136 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 2904305 20783738 ~ 20787618 (-)

Expression


Co-expression Network