G53138


Basic Information

Item Value
gene id G53138
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 18385769 ~ 18386992 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71644
caccaaactgaactgcttgattttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcctaaaactttataaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttgttatttcagc
>TU71645
caccaaactgaactgcttgattttttgcaccaggagtaaagcagcataaagttatccaaaagcagtgtgtaagactggtggaggagaacatgatgccaagatgcatgaaaactgtgattaaaaaccagggttattccaccaaatattgatttctgaactcctaaaactttataaatatgaacttgttttctttgcattatttgaggtctgaaagctctgcatcttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71644 True 240 lncRNA 0.36 2 18385769 18386992
TU71645 False 230 lncRNA 0.36 2 18386256 18386992

Neighbor

gene id symbol gene type direction distance location
LOC103035822 NA coding downstream 716044 17668664 ~ 17669725 (-)
LOC103035515 NA coding downstream 720508 17648451 ~ 17665261 (-)
LOC111192622 NA coding downstream 909178 17468051 ~ 17476591 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding downstream 921476 17189815 ~ 17464293 (-)
LOC103024300 mkx,LOC108274364,LOC107665863,LOC107738971,LOC107549415,LOC107584376 coding downstream 1457530 16822247 ~ 16928239 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding upstream 194888 18581880 ~ 18610419 (-)
nat9 nat9 coding upstream 257463 18644455 ~ 18648875 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding upstream 269840 18656832 ~ 18689601 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding upstream 310002 18696994 ~ 18728233 (-)
LOC111192624 LOC108430317 coding upstream 343051 18730043 ~ 18741304 (-)
G52995 NA non-coding downstream 196102 18189467 ~ 18189667 (-)
G52951 NA non-coding downstream 383456 17961546 ~ 18002313 (-)
G52947 NA non-coding downstream 475698 17909488 ~ 17910071 (-)
G52946 NA non-coding downstream 506336 17878807 ~ 17879433 (-)
G52891 mtr,LOC107674399 non-coding downstream 593825 17775882 ~ 17791944 (-)
G53139 NA non-coding upstream 15287 18402279 ~ 18403400 (-)
G53175 NA non-coding upstream 258887 18645879 ~ 18646876 (-)
G53168 NA non-coding upstream 267200 18654192 ~ 18698127 (-)
G53184 NA non-coding upstream 391169 18778161 ~ 18867587 (-)
G53185 LOC108430338 non-coding upstream 391722 18778714 ~ 18786708 (-)
G52652 NA other downstream 1795986 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 1958156 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2028809 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 2158595 16226236 ~ 16227174 (-)
G52493 NA other downstream 2200457 16182735 ~ 16185312 (-)
G53164 NA other upstream 199409 18586401 ~ 18667287 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 1135710 19522702 ~ 19570378 (-)
G53382 NA other upstream 1462958 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 2234577 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 2396746 20783738 ~ 20787618 (-)

Expression


Co-expression Network