G53168


Basic Information

Item Value
gene id G53168
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 18654192 ~ 18698127 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71693
ctcttctgaagtctccattgctccaccagccgctcgcgttcagtaaaactgagccggatcctcttttagaggctgtacatgtgatgtaagtacgtaaagacagaCGCGTGACGCGGCCAGAAGAAGAACCCTCGCGAAAAGCGAAcaaacaccccagtttttagaatgagtatattattaggcttagcacaatattttatcaatattcttctccactcagaaatgcttctgctttcagtttagaaactaaataatacagactgacacTTTAATTACTTCAATTACTTTTACaagtttcttgtctcttaataaagtgtttgagagcatcagttgtaaagtagtgaagaggtagagttaaaaATATCCATCAGTTAATTAAAAAAGAGGACTTTTCAAGTGCAATCACTATCTGAaacatgatgatgaaactggcactcatcagaaacGCCCCTGGAAAGgaggagcaagagttacctctgttgttcAGGATTAGATCATCAGAGTTAACAGCCTTAGAAAagttgtttttgtctgtttaacacttttaagttactacatgattctttatgtgttccttcataatctggatctCTTCACTATTCATTAACTATGTAAGTAAAACGTTattgagaaagtgtgtccaaacttttgactggtactactGTATAATTATATACCTTTATAGTATTAGAGTGTAGTACacaattgggacgcggccgtgaTGTTACTAGGCCTCAGTGTTCAGAGTTTAATCACAATTTTGGGTATATCGATAGCTATATCCATATATTGACAGCCACCCATATAAAGCTATCTagatcactttattataaacttaTTCAATCCCAGTTTCTGATTGGTTTAAATGAAGGATGGCGTTTGATGTCGAAGCACTTGTGTATTTCTGTATCTAATTTGTTCCCCAAATAAAGGAATGGAATCTAAATAGTCTGTTTGAATGTTGGTGCTTGTTCTTTTTTAGATAAAGGGattgttctctggaatgattgaATCTTCTGTATCTTTGAGTATCAGAAGTAATTTTTAATTAGTCAGTATCAACAATATAATAATCTATATTTGTTTAGAACCTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71693 True 1095 lncRNA 0.35 2 18654192 18698127

Neighbor

gene id symbol gene type direction distance location
nat9 nat9 coding downstream 5317 18644455 ~ 18648875 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding downstream 43773 18581880 ~ 18610419 (-)
LOC103035822 NA coding downstream 984467 17668664 ~ 17669725 (-)
LOC103035515 NA coding downstream 988931 17648451 ~ 17665261 (-)
LOC111192622 NA coding downstream 1177601 17468051 ~ 17476591 (-)
LOC111192624 LOC108430317 coding upstream 31916 18730043 ~ 18741304 (-)
LOC111192707 NA coding upstream 424493 19122620 ~ 19143280 (-)
LOC103025356 NA coding upstream 739506 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 907428 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 984264 19682391 ~ 19839582 (-)
G53175 NA non-coding downstream 7316 18645879 ~ 18646876 (-)
G53139 NA non-coding downstream 250792 18402279 ~ 18403400 (-)
G53135 NA non-coding downstream 255044 18350272 ~ 18399148 (-)
G53138 NA non-coding downstream 267200 18385769 ~ 18386992 (-)
G52995 NA non-coding downstream 464525 18189467 ~ 18189667 (-)
G53184 NA non-coding upstream 80034 18778161 ~ 18867587 (-)
G53185 LOC108430338 non-coding upstream 80587 18778714 ~ 18786708 (-)
G53199 NA non-coding upstream 150602 18848729 ~ 18892877 (-)
G53209 NA non-coding upstream 229199 18927326 ~ 18927932 (-)
LOC111192726 NA non-coding upstream 419339 19117466 ~ 19120375 (-)
G52652 NA other downstream 2064409 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2226579 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2297232 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 2427018 16226236 ~ 16227174 (-)
G52493 NA other downstream 2468880 16182735 ~ 16185312 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 824575 19522702 ~ 19570378 (-)
G53382 NA other upstream 1151823 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1923442 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 2085611 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 2119712 20817839 ~ 20819409 (-)

Expression


Co-expression Network