G53175


Basic Information

Item Value
gene id G53175
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 18645879 ~ 18646876 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71703
ACTTACCATGTAGGAACAGACTGTAATCCTGTATCGGTTTCTCagcataatttattattatcctcctttcaccctgttcttctataaggtgtttaaaaactccagcagcactgctgtatctgattcactcactgtaccaccagctcaacactcactaacacctcatacaccaccaccatgctaatcactgctgtatctgatccactcactgtaccaccagctcaaccacactaacacctcatacaccaccaccatgctaatcactgctaatcactgctataTC

Function

GO:

id name namespace
GO:0015250 water channel activity molecular_function
GO:0005198 structural molecule activity molecular_function
GO:0005212 structural constituent of eye lens molecular_function
GO:0005372 water transmembrane transporter activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71703 True 283 lncRNA 0.43 2 18645879 18646876

Neighbor

gene id symbol gene type direction distance location
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding downstream 35460 18581880 ~ 18610419 (-)
LOC103035822 NA coding downstream 976154 17668664 ~ 17669725 (-)
LOC103035515 NA coding downstream 980618 17648451 ~ 17665261 (-)
LOC111192622 NA coding downstream 1169288 17468051 ~ 17476591 (-)
LOC103037795 mpp7,mpp7a,LOC107657298,LOC107665879 coding downstream 1181586 17189815 ~ 17464293 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding upstream 9956 18656832 ~ 18689601 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding upstream 50118 18696994 ~ 18728233 (-)
LOC111192624 LOC108430317 coding upstream 83167 18730043 ~ 18741304 (-)
LOC111192707 NA coding upstream 475744 19122620 ~ 19143280 (-)
LOC103025356 NA coding upstream 790757 19437633 ~ 19459375 (-)
G53139 NA non-coding downstream 242479 18402279 ~ 18403400 (-)
G53135 NA non-coding downstream 246731 18350272 ~ 18399148 (-)
G53138 NA non-coding downstream 258887 18385769 ~ 18386992 (-)
G52995 NA non-coding downstream 456212 18189467 ~ 18189667 (-)
G52951 NA non-coding downstream 643566 17961546 ~ 18002313 (-)
G53168 NA non-coding upstream 7316 18654192 ~ 18698127 (-)
G53184 NA non-coding upstream 131285 18778161 ~ 18867587 (-)
G53185 LOC108430338 non-coding upstream 131838 18778714 ~ 18786708 (-)
G53199 NA non-coding upstream 201853 18848729 ~ 18892877 (-)
G53209 NA non-coding upstream 280450 18927326 ~ 18927932 (-)
G52652 NA other downstream 2056096 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2218266 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2288919 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 2418705 16226236 ~ 16227174 (-)
G52493 NA other downstream 2460567 16182735 ~ 16185312 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 875826 19522702 ~ 19570378 (-)
G53382 NA other upstream 1203074 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1974693 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 2136862 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 2170963 20817839 ~ 20819409 (-)

Expression


Co-expression Network