G53185 (LOC108430338)


Basic Information

Item Value
gene id G53185
gene name LOC108430338
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 18778714 ~ 18786708 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71720
tttcatatatatttttattactacaGTTTGTGtctcaaacattaaaaatgagtaGTCAAAAACCCCCAGACCCACAAATCAATACATTCATAACAGCTTTCCATCGCTCTCAAAAAACCTGTAGCTTCCCTTCTCGTACCATAATCACTGCGAACACTTCCTTTACGGCTGAGACACTGTTATCATCACCACATAATCATTATAAAGTAAATAGTTACCTTTAATGCAATAGTTTCTACGCTAAATCTCATGGCATGCACTATGCAATATGAAAATGAACATCTCAGTGTAAAACGTGTCCTACATAAAAAGAAGGGATTTATATTGTGTGTCATTTCTTACTTAATACCTTATTCCTTTAATCATCACAAATTCCTTATGTCTCTAGTGCTTCATTTACTGTACCTTCCAACAACCAACTACAAAACCCCAGAGGAGAAATGGTACCCACCACAGGATCTGTTTAACTGGTTATATGGTTATAcatcatcattaaaaaatagttgcacctaGAAGGTTGAAAATGTTGAACTCTTTTTGGCTAAATTactttaattcagccacattggaggttttttttgttgttgttgagaataaacgtcctgtttaagatcatccacagaaatatttttaagccattcagtaatggacttgtttgtgtgctttgggtcattgtcctgctgcagaatccaagtacacctgagcttgaggtcacacaCAGATGGCGGGACATTCTCCTGGTAAACTGTAGCAGAAGTCCTAGTTTCATCTATTATAGCAAGTTCTCCAGATCCTGAAACAGCAAAGCAGcttcagaccatcacactaccaccaccatgctttttttttttttttttagtatgatTTTTTCTGAAATTTACCAGGTTTCTGAAATCTAGAAGGTTGAAAATGTTGAATTGCTTTACTATTTATACGGAAGATAAATGTTAACGGAAACAATACATGATTAAAAGAAAGATTTAGACTGATATAACCAATATTTATTgggctacacatacagaagtagtgtttGATGCACGTGTAACGCTGCTACGGAGTTGtggaggttcctaatggagacCAGTGATAATCCATCCAATATAATCAATCTGTGTCTTGAAGACATAAATGTCTTGCATCACCAGGCCTAACCCTGACTGAATATGTGTGGGATGAGAATATTGGAGCTATATGGGAGagattatcacaggactccattaggaacctctacagctctgtaaatGCCGAGACGTCTACTGAAACGTCTGGCATGTTGCTTTGGTACACATCCGCTAAACTCTACTTTAGTAagtgtagctcaataaacatTGCCCATATGTGTTTagatttatattcatttattgttataaattaaatatgacATCCATCTTCTTTTTGAATTGCATTTTAATGCAACCCTTTAACCTTCTGCAACCTTCTTGCAAGTGCAACTATCTCTTTGATGATGATAAATTTATACATTTACCCTTTAACTTTACAATTTTAGTTATGGGTTTGAGTTATGGGTAAAGCACAAGCCTCAAACAGAAGAAGTCATGTTTGTTTTTGCAATAGCGTCTTCCACAGTAAGAGCAGGGGCAAtgaaacgtaaaaaaaaaggcGTAACACTGGCGTGATGGAGCGGCATAAACCATGCACTGAGAAATGACACAGGTGCTTTTCCAATCTGTCATGCAGTCATCTCCGCCATAACTCTCGCCACGGGAGCCGCATGCACTGCCGAATGTAGCACAGGGCAAATATGAGCGATCAGCATCATCACCTTCTGCAGTCTGGAGAAGCATCTGAGCGAAATGAGCACATGCATCAAGCAGCCAAAGCTCTTTTTCCAAAATCCAGGGGGAGGTGCTTAGCATGAGATtgaaggaaaaacatcattaatGACTAAAGACCAATACATTTCTATgattttttcattacttttccatgccttcaaggcaaattgcCATaaccataacatttttaaaacatcagtgcagacatggacagtaaaataaaaaaaaataactaaaactatcaatttatattaattaaaagtagGTCTAAAATTAATCTGATAAAAGGCTGACTCaccatttttaatatttcaataaaatgtgtgtcagatactgagagctccattgtgtagggttaaattactaaattaactctaagctgatgtatttgtagctCTAAATAGATAGATTTCActtccatcgataaactgaaactcaAAGATTTTAGACCAAATTtcaatgacttttccaaaactaaTCCAAGCATGGAaattcaaattccatgacttttctagGTTTTTCATGAGCCTATAAACCCTGTAATGACTACATTTTGtctaattttatcccattttctcttttatcccATATTTAAAAGGCCTTATACTGCACTTTTCAAATccagctgatgcagcatcatgATGATGGGTATCATCACAAAGCACTTGAAGGAAAGTGCCGCATCCCCAGCTAGGGAGAGCATgcgggccaattgtgctctctctgactccggctgctgatacCAAGCAGCATTAGCTGGCAATCCTCGGATCATAGTGGCTTTAAAGCACATAGGGGAAAGCTACgcatccccagctctgatacctcagttaacagatgcctgtgctgaccaacatcacacagtaagagtgatgaggggaaagagagagcgccacctactgtacTCAATTgggctctctcggactccggctgctgatgccaagcagcatgatctgggattcgaaccagtaatCCTCGGATCATATTGGCtacattttttaacaatgtttGAATAATACCATATGAGTAATACATTAAAATAGATTCTAATTTAGACCATTAAACAATTTAATATGAacgttttcttaaaaaaatacttttttaatcaaGCTGTGTATTGGTAAGAACTTGGCGATATGATACGTATCACGATACAGGAGTTACAATTCACTACATACTTAgaattatattgtgataatgtaAGCAATGGGATTTTAGGAATATTAGGAAAACTCACATagtataaaaacactcataattataaaatcagagtaaaatcatttaaaataaaaatcgacTTTGAATCCAAGAATAAGCCAATCAtcagtgggcggggtttaaacactaaactaacataaactaaattaaccacttctgacaccaatttttacatgtaaactactTTGGTACAGTATTGTaatacaaaatattgcaatatttcaatatattgatattttctaacactctttaacacattttaactgagtttaataaaagaaatagtgcttatctacaatgcaaaaacaGATAGACTCAAACATcacagcagaaccaatcagaatttcTGTTTTATGGAGGGGCGGGACTTTTCTTTGCACATGCATCAAGCAGCCAAAGCGATCCACTCCCAAATATATGGAAATCAAACCTGCAGGTCCAGAGATTAGGGTGCTGTTTAGTGTGATTTGTACCATCTCTCCTGTGGATACCAGTCCTGTTTCTTTccacacagacaccatagcataTAGCATTTAGCATATAGCATTTAGCATCCCTTTCATCTCTCTTTGTCAGAACCGCTGTGCCTCACTGTCCGTCGCTGCTCCAGATAACTCAATTTCTTACAATTTATAACATCCTGTGACAATGTTGACACATGTATAGAAACCCTCTCAAGTTCCAAGTCCAAGACAGGTCCATACATCTCTGCAGTGGAATGAGCTGCATGTCTTCATTCATCATCTTTGATCTTTATCTCATCTTCACCTGTTGAAAGATTTCATCTGTTGAAGcctttttcattctttctttttgttccttttttacACCCTGGTAATCCTTGTAATCAGTAACCTTTGTGGGCTTGAGTCACGTCTATGATAGTGGTGCCCACTTATGGCCccatttagaaaaataacatttaataataaactaaaataaaatgttaattttccaCAATTTCCTATTTTccaacccactcactcactaggacttcccctatcacttgcaatgctcccaacactagTTGGGAGATATACTCAGATATACAGTACTTGAAGTCAAATCCCGCCTTTTTTCCAATTGCCGCCAATGCATTGCAGCTATTGACAGCTATTGCTAAGTTTGCAGAAGAAAGCGCCAGATCCCCATCTTTGATACATCAGCCCACAGATGCCTGTGTAtcttctacccacccagagagagcgagagagcatggccagttgtgttctctctcagactccggctgctgatgctgagtCCTAATTTCTTTCTACTAAGTAAAATTGCATGAAATTTCAAATCAACTCATCTAATTGTGTAGACAGGTCAATAAATGTAACTGGTGATCAGGAAAGCAACTTAATAAACTGTGCACATGCAATCATTAGTTCCAGTGTCCAAATGTTCCACAGATGCACTGTGCAATGCACCGTGTTACTTCACTACTTCAACGCGCTggttcaatttatttattttttttttaggcatgGTGTAGTTTAGTACATCATGGAGCCAGGCCTCCACACTTTGGGTTGCAGGCCCATGTTGGATGTGCTGAATCGGGGTCTGGGCACCTGCAGGTTCTGGCTGCTTCCAGACACCGCAGAGCGCCCCCTAGTGGGTGACAGGGGGCTCAGCTCAGGGGCACTTTTGAATTGCTTTGCTGCCTGGAATGGAGCATGGGCTTGCATAGGTGTAGGTGCTGGGATGTGAACTGCATTGGGCACAGCGGCAGTGGAAAACTGGGGCAGTGCTGGCAGCGCCGCCGtaggggcaggaggtggaggagaaaagggTGCAGCAGGCCGTGGAGCAACAGGAGGCGGTGAACTGAGGTCAGATCGCCATAGAGGCTCAGCCAAAGTGGTGGCAGAGCGAGGGACGATCACTGTTGGCCTCAGGGTGGTGGGTGCTGACATTGGGGGTGGTGTGGAGAACCTCTTGATCTCGTAGACTCGAGGAGATTTGACAGGGACTTGCTTTGGTGAGATCAGGTTGCTGCCGGCTGTGGCAAATCCATTTTGTTGTTGGTAGGTTGAAGCTGTCTGAGGTACGCCTCCCCCATAACTGAACAAAGAGCTGTTAAGCTGGTAAGGCTGTCTGCTCATGAAGTCCAAAGCTTTGATGCCTTGCTTGTTCTGGCCAGGAGCTGCCTTGATTCCGCTTCTTGGAGGTTCATTAGCCTTATTGCCTCGCTGGGCCACTGGGGGGCAAGACGGGGACAGCAAAGGGTTATAGCTTATTGGAGGAGGGGCACGGACATTGGGGGAGTATTTCCAGTTAGAAGAGAGCGAAGGTGTTGGAGATGGCTCGCGAGGCTGAGCTGGAGATTTGGGTTGCTTGTCTACCACATATCGATCCATGCGACTTTGCCTTCGTGCAAACAGTTCGGCTCCTTTACCTCCCATTTGAGGGATCTCGGGGGCTTTGTGTGCCGGGCTTTGGAGCCACCGGTGGCGCCATTTTACCCCTTTGGGCTTGCATGAAGTTGCAAGCTTCCGCACCCAAGTTGAGGAAGTCCTCTTCTGGACCAGACTCAAAGCCGTGCTCTGCTCCGGAGCGAGACCTGTCGTCGAAGTTCTGCACGAGAGACAGCAGCTCCGGGTTGTAGGACACAGGCTTCTTCTCCTCAGGTTTGGTGAACATGGGTTTATTAGTGCTGCGCCGACGAGCCTCCTGCAAGATGCCCGTGCGAGTAGCTGGCACAGAGATCCGCTGCTCTCGAGAAGAAACCACTGGGCCTGAATTGGAGAGGGGATATTGCTGGGGCACGGGGGTCACTGCTGTTCCGGATGTAGTAGTTGCAACTGAGATATATGGGTTAAAGGAAACTTTGTGGCTTGGCGATGGCTGCATGTTCTGAACCTGAGGAACATCTTGAGGAACTGTTGGCGGAATTTGCAGAGGGGCAGGAGCTGGTGCATAAGCTGGTGCATGAGCTAAAGCAGGAGGGTGGGCAGTGGAGGAAGGAGTGTAAGGGGAAAAATAGGACTGTGATGGCATTGAAGCTGGAGGTGGAGGATGATATGGGGTGCTAGCCatggaagaagaaggaggaggaggaggaggactgaAAGTTTGTGCTGCGGGCGTAGAATTAGGTGGAGTTGCCATAGCTGTAGCTGGGTTGTAGGGTGGAGCTGAAGCAGATGTAGGAGAGAAGGGAGATATTCCTGAACCTTGTGGAGAAAAAGGTGGGTAGTTTATTGCAGGAGAAAATGGAGGGGAGGTAACAGAAGAGGATGGAGAGAAGACTGATGGAGGGCCACTGACTGTGGCAGGTCTGGGTGGGATGTACAGGGAAGAGGTGGAGATTGCTCTCTTTCCATCAGAGCCACCAGAACCACCAGGGCTGAAAGGGGCTGCAACAGACGCCACAGACACAGCTTGAGCTTGAAGTGGGGCTTTCTTGGCAGTGTTGGGCCTGAAGATGACTGGAGCTGTGGATGCTCTATGGCTGACGCAGCCTGGGGCGAATGGTTTGGCTGTTCTGTTGTGGATAGAGTTGCCAGACGAAGGGTCTGATTGCTCTGGTAAAGTTCCTGTCATGGGGGTTATTGAAGTCTGGCCTGGTGAAGATAGCACCATGCTGGTTCTGCTCACCACCATGGGTTCACCATTCACCATGTTGCTGTTGTGAGATGAAAATGGAGTAGCCTGTGTAACTGGAGCAACTGGTGTGTACATCATCATATTATTGGGCTGCTGCTGGGGCATGGGGGCCGGCGTCAGGGTAACAGGTGTGGATGTATGCTTCTCAGCCCTCTTCCTTTGTTGCTCAAAAAGTTGTGCCCCTTTTCCAGAGGTGGCACTCAGACCAGGGCTTCCCTCTGGGTCTTTGTCAGTTACCACGCAAGCTGAGGTCCTCCTGTCCAAAATATCCAGGTAGCCACTGTCCCAGGTAGGATCCGGCGCTGCAGAAAAGCAGTCCTCGTCCAACTCTGACTCGCTGCCCGGGAAAAGACTCTCGTCTTCGGTCTCTCCTTCTGTGTTGCTCAAGCTCTCACCGTCTACGCTTCCCAAAGCAGGTAAGTGTGTACTTCTTTGCGCGCTGACGGCGCTTCTTGAACATAAGCACACCTTTCGAGTGAGGATTTGGAGCGTCCGTCAGAAGTGAGGCAATGGTGCGGCACTTGGTTCGGGCCTCCTTCACCTGCTTGTCCTGTACACTCTCGCTCCGGTGAAGCTCTGTGGACGAAAAGGAGACATTtagagatatattttttttcacattcaaAGGAACACTTGATTACGGTAAGGATATCTGCAGATTCTTAATCTAAAAACAACCTTAATGTCTCATATTCATCTAGTATGAATGAGCCCTGTGAGATGGCTTCTTTGGGTTCCTGTTTTAGGCTGTTT

Function

NR:

description
PREDICTED: synaptopodin 2-like protein

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71720 True 7382 lncRNA 0.44 2 18778714 18786708

Neighbor

gene id symbol gene type direction distance location
LOC111192624 LOC108430317 coding downstream 37410 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 50481 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 89113 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 129839 18644455 ~ 18648875 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding downstream 168295 18581880 ~ 18610419 (-)
LOC111192707 NA coding upstream 335912 19122620 ~ 19143280 (-)
LOC103025356 NA coding upstream 650925 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 818847 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 895683 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 1115585 19902293 ~ 19906073 (-)
G53168 NA non-coding downstream 80587 18654192 ~ 18698127 (-)
G53175 NA non-coding downstream 131838 18645879 ~ 18646876 (-)
G53139 NA non-coding downstream 375314 18402279 ~ 18403400 (-)
G53135 NA non-coding downstream 379566 18350272 ~ 18399148 (-)
G53199 NA non-coding upstream 62021 18848729 ~ 18892877 (-)
G53209 NA non-coding upstream 140618 18927326 ~ 18927932 (-)
LOC111192726 NA non-coding upstream 330758 19117466 ~ 19120375 (-)
G53227 NA non-coding upstream 383141 19169849 ~ 19171075 (-)
G53234 NA non-coding upstream 431939 19218647 ~ 19219263 (-)
G53164 NA other downstream 111427 18586401 ~ 18667287 (-)
G52652 NA other downstream 2188931 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2351101 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2421754 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 2551540 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 735994 19522702 ~ 19570378 (-)
G53382 NA other upstream 1063242 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1834861 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1997030 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 2031131 20817839 ~ 20819409 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G38421 NA non-coding CI01000005 null 4209148 ~ 4215199 (-)