G53209


Basic Information

Item Value
gene id G53209
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 18927326 ~ 18927932 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71753
cactgtaccaccagctcaacacacactaacacctcatacaccaccaccatgctaatcactgctaatcactgctaatcactgctgtatctgatccactcactgtaccaccagctcaacactcactaacacctcatacaccaccaccatgctaatcactgctaatcactgctgtatctgatccactcactgtaccaccagctcaacacacactaacacctcatacaccaccaccatgctaatcactgctgtatctgatccactcactgtaccaccagctcaacactcactaacacctcatacaccaccaccatgctaatcactgctaatcactgcagtgctgagaata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71753 True 346 lncRNA 0.47 2 18927326 18927932

Neighbor

gene id symbol gene type direction distance location
LOC111192624 LOC108430317 coding downstream 186022 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 199093 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 237725 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 278451 18644455 ~ 18648875 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding downstream 316907 18581880 ~ 18610419 (-)
LOC111192707 NA coding upstream 194688 19122620 ~ 19143280 (-)
LOC103025356 NA coding upstream 509701 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 677623 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 754459 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 974361 19902293 ~ 19906073 (-)
G53199 NA non-coding downstream 34449 18848729 ~ 18892877 (-)
G53184 NA non-coding downstream 59739 18778161 ~ 18867587 (-)
G53185 LOC108430338 non-coding downstream 140618 18778714 ~ 18786708 (-)
G53168 NA non-coding downstream 229199 18654192 ~ 18698127 (-)
G53175 NA non-coding downstream 280450 18645879 ~ 18646876 (-)
LOC111192726 NA non-coding upstream 189534 19117466 ~ 19120375 (-)
G53227 NA non-coding upstream 241917 19169849 ~ 19171075 (-)
G53234 NA non-coding upstream 290715 19218647 ~ 19219263 (-)
G53317 NA non-coding upstream 341598 19269530 ~ 19301099 (-)
G53319 NA non-coding upstream 352804 19280736 ~ 19283478 (-)
G53164 NA other downstream 260039 18586401 ~ 18667287 (-)
G52652 NA other downstream 2337543 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2499713 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2570366 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 2700152 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 594770 19522702 ~ 19570378 (-)
G53382 NA other upstream 922018 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1693637 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1855806 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1889907 20817839 ~ 20819409 (-)

Expression


Co-expression Network