LOC111192726


Basic Information

Item Value
gene id LOC111192726
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19117466 ~ 19120375 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71774
gagaCACAGAAGACCCAGCCAGATGCAAGCAGCATTGCTGagATACAGAAGACCCAGACGGATTCaaacagtgctgctggagggtCTAATGCAAGTGCTAAAAACCCCAGGAAGAGGACAAGAACGCTGTGGTCAAAGCAAGAGGTGATGGCTGTGATGAAGCATTTCAAGCCTCACATAACCAAGGGAAATCTGGCAACCATGGCAGAATGTCAGCAGTGCAAGGATGCTGAAGACCCTGTGCTTGCCGGTCGAACAGCACAAAATATAAGAGATTTCGTTAGAAATCGAGGAAtcaccaataaaagaaaaatgcagtcaagctaaatatattttgtttagggACATGTGAGTTcatgttcttctttttttttgtttgtttagggaCATGTCatttatgtttatctgtttaCTTCTTTTCATAATCAAGG
>XR_002650111.1
tcaggggtgcccaaactttttcataccactgtatgtgCAGGTATTCAGTCCcatttactctgaaacccctagATAAAAACCAGTCTCTACAGAAGTCTCTATAGAAGTGCCTATAGAAAGTATTATTACCCTATTGAAATCCTTTATacccacattattattataccctgaaaatcagaataaaacCAGCTGTTCCTGGATCAGTTCACTGCTAGTAGTGCATGGTCACACCATGGTTAGAAAGTTGCTTTTTAAAGAGCTCTGTGATAGAGTTGTGGTAAGACAAGTTAGGATGAGGGTGCAAAACCATTTCAGCAGCTCTAATGTTCAGAACATTAGTAGAACATACCGTTCTGcagtaattgtattattattataaagtgcaagtaaacattttatatggcAGTCTCCAGATAATGttgtattataatttaatgttctgtttttttagagaCACAGAAGACCCAGCCAGATGCAAGCAGCATTGCTGagATACAGAAGACCCAGACGGATTCaaacagtgctgctggagggtCTAATGCAAGTGCTAAAAACCCCAGGAAGAGGACAAGAACGCTGTGGTCAAAGCAAGAGGTGATGGCTGTGATGAAGCATTTCAAGCCTCACATAACCAAGGGAAATCTGGCAACCATGGCAGAATGTCAGCAGTGCAAGGATGCTGAAGACCCTGTGCTTGCCGGTCGAACAGCACAAAATATAAGAGATTTCGTTAGAAATCGAGGAAtcaccaataaaagaaaaatgcagtcaagctaaatatattttgtttagggACATGTGAGTTcatgttcttcttttttt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71774 False 431 lncRNA 0.42 3 19117466 19119925
XR_002650111.1 True 822 lncRNA 0.40 3 19117525 19120375

Neighbor

gene id symbol gene type direction distance location
LOC111192624 LOC108430317 coding downstream 376162 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 389233 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 427865 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 468591 18644455 ~ 18648875 (-)
grem2 grem2,grem2b,LOC107746751,LOC107570400,LOC107659701 coding downstream 507047 18581880 ~ 18610419 (-)
LOC111192707 NA coding upstream 2245 19122620 ~ 19143280 (-)
LOC103025356 NA coding upstream 317258 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 485180 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 562016 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 781918 19902293 ~ 19906073 (-)
G53209 NA non-coding downstream 189534 18927326 ~ 18927932 (-)
G53199 NA non-coding downstream 224589 18848729 ~ 18892877 (-)
G53184 NA non-coding downstream 249879 18778161 ~ 18867587 (-)
G53185 LOC108430338 non-coding downstream 330758 18778714 ~ 18786708 (-)
G53168 NA non-coding downstream 419339 18654192 ~ 18698127 (-)
G53227 NA non-coding upstream 49474 19169849 ~ 19171075 (-)
G53234 NA non-coding upstream 98272 19218647 ~ 19219263 (-)
G53317 NA non-coding upstream 149155 19269530 ~ 19301099 (-)
G53319 NA non-coding upstream 160361 19280736 ~ 19283478 (-)
G53326 NA non-coding upstream 163777 19284152 ~ 19287211 (-)
G53164 NA other downstream 450179 18586401 ~ 18667287 (-)
G52652 NA other downstream 2527683 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2689853 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2760506 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 2890292 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 402327 19522702 ~ 19570378 (-)
G53382 NA other upstream 729575 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1501194 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1663363 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1697464 20817839 ~ 20819409 (-)

Expression


Co-expression Network