G53317


Basic Information

Item Value
gene id G53317
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19269530 ~ 19301099 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71901
TTCACCATAATTTTAGTATACTTTTTTTCCACAAGTGAATTATCCTGAAATCCTAAAGCACGTGTCCAGTGATGCTATTGTGACAGGGCAGAGATGGATTCAGAAAATTCCTAAATACAGATGTTTAAAAGTGACTCATTCAGAAGCTGATGGAAGCAACACATACAGGAGTTTTGGCCCAGAGAGGATGACGCCAATTCTGGATAGTACTGACATGTGGGTTCTTCTCTGCAGGATTACAGTACGATAAACAGACAGTTATGATTTCAGGAAGTGTTTCTGAACTGTTCCTGAATAATTTCCATTACAGAATCCGTAcagcttttaatgtttttaatgcagtccCACCACCTGAGGCCTGAAGATCATCAGCATCCACCAGAATACTGACTGTCAGCACTGTACCTTAAACACAGAGATTTCTCCAAATTATCTTAATCTTCACATGATACTATGGACTGTATATGGAGGGATTTATTAAAGCttcactaggtaggattgagattttgtgctcgtgggtttcccctacagttgtagagtgtaataaatgtttcaggtggattagtttctctttctcgttttctggctttcacagacatattcggtctcttttcagcttctgccagagtgtctgtatgttagtttgtaaagagtgaaccagtagtccttgtagaactgttagaggtcggaaagcaggtcgcagttctcgcgagcgttggtcgcgacCGCcttggaaaacttacagagtctggtttgagctcagaggagctccggcacagacacgaaagcaccactattcctcctattacacctcaatgcagcgctgcagtgagtttcaagctgtaattttacttcttcaaaaagatcaaaaattaaggaaatcctacctagtgctgctttaagtctTCAAAATTTTACGTTGAGGAATACTGGCTAAAATAGATCCACAATTATTAGCCAATAATTTTTTTGAGGTGCGTTGCTGGTTCTAAATTAACTAATGTTTTTCATTGACTTGGCAACCTATGACCAAATCTCTATGCATTGCCTCCGCAATACCACatcgctctgcagtttaaatcgtgaaggcaggtgtgtgtgtgtgtgtgacaaacatttgttttggttacctgtgCATAAGTTTTGTGCAACATATTTAAAACCTGATGATGAATATTGTGCCACTTTAATCTTGTTAATCTTATTGTCTTcccttttaatatattttaaacactcATATTTACAGCCATATTAATTCACATAAGCATGCATTTTTTAAGCTTCAAAGCTATCATGACAGGACAAAAGTGTACTCAGATCATTCCCTTATACTGTAGTCCAAGTATCTGAACCCATAATGTTCACTGCAGACCACCATCCTGGCACCTTCTtagatatttaaacatataattatattattattcttgagcgtatatttaaaatagcatAAACAATATCCAAATGCATTACTCTatgccaggggtgtccaaacttttttttgttggggccagaaggagaaatacatGTGCAGTCATGGGCCACAgattctgtaataaaacaaataataaaatataccacttataataatacatttttttaattactattatttacaCACCGTTTTACTTGAGTtatatctatctttgacagtgctGTGTATACTAGAATTTTCTAATTAATGTTTCGTAccataatgtctcttaatattatactcTTTTAATACGGCAACTGATTACATTTGTagtgttttagactctttggcctgttttctgcgatACAACTGggcactctcgccacttttagactctttggcccgttttctgcgctacagctgagcactctcgccgcttttagactctttggcctgttttctgcgatACAACTgggcactctcgccgcttttagactctttggcccgttttctgcgctacaactgagcactcttgacacttttagtctctttggcccgttttttttgcgctacaactgaacattcttgctgcttttagattctttggtcCATTTTCCGTGCTACAGCTAAGCATtcttgccgcttttagactctttggcccattttctgcgctacaactgagcactcttgacacttttagactctttggctcgttttttgtgctacaactgaacactctcgccgcttttagattcCTGCTCAGTGGGAAAGAGCATATGTTGGTGATGTTGGGTGCAACCAACCCTGGATAATGATGGAAGCACATTTGAGATGAGAAGACGAGAACTGAGCGTATGAGATGGTTCTGCATAGACTTACGCCAATGGAGATCCAGCAGCAGCCTCCTCACTGAGAGCCGCGGGGGGGGAGCCGGGGTGGGGAGGGGCAACATGGGGCCGTGTCACACAAGGGGGAGGGGACAAGCAGTGTGGAGCAGGGATGAGGATATtgtgtggttggttggttggttggttggttgagaTGTTGAGTGGTTGGTTGTGGATGGAGTGATCGGAAGTTGAAGTTGGAGGGAAAGTAAAGGACAGATGAGGTTGACGCACACTCATGATACAAatacacactttatatacacaatacacataatACATACAAGTTGCTCTTTTGGAGATATTTGGCTTTTATAGAACAGCAACGATATTTACTCTACCCCAAATGTTTCTTTTAGTCTACCTTTTTTGAGCCCTGTTTAGCATCTATCCataggtgagccatcaactgtgcaccatgtagattgatttagggtgtgtcgtttgtctttgctatcataacgacgggaaaagtacaccttgcacagttCGAAATGAACAAAAGGCCcgtactaattctctttaattaattaatcatgggtgtggtaaATTCTGgtcgtaacgtgaaataaaccaatcagtgtatcacttgccattcactttaagagccgggtatgctctgactttggcagattgctattttaacagtgcagtgcttctgcgTTTCATAGTAGAGGAAACTaacctgcttgttcacactgtgGACTCGTTCCTCTActgagaaaaacatttaaatttcaggaattataataagttacgtatcataaattatttttagagtaatattgtataaataaagtaactgtAATTaggtaaaggttactaaaagaaaggactgaCTGAAAtttagttcacttatttactctgcaatttactatgtaacttttaagtCTTGAAttcgagttgaagttacttgttaaatttatctgaaattaaattttcttaaaaaaaaaacaatgcagaaagttgcgaaacctttttaaagtaaattttactcataatttttttcagtgcagggtgtacaatagggccctgaAAGTTTCAGATCAGTATTACAGATTTGGCTCTTTGCTTGATTATCTTGGTCCCAATTTCCCATAATTCACCGTACCTATTTTCatgattgtttttaaaaactcaCGTCATATCTCCTCCTCTGGCCTGAGCCTGGCCGGCGATGGCGTCCATGATGGCGTCCTGTGAGTACATGCTGATGGGAGTGTTGTACTGGGCGTGGATGATGGTGGCCTTACCCCCAGGACCCTTCACCTCTATGGGCTTGTGAGTGGACAGAGCAGAGTCCTTCAGTGCAATGGGGTTGAAGCTGGGGATGTACTCTTGGCTGTGATTGGTCGGGAGGGTGGtgaggaaggaggaggaggaagaggaggaggagggagtgTGCAGGTTTGGGTTTGGGAGGTGGGTGGTTTGTTGGTGAGAGAGATTTGAACAGAAAGAGTGGATAATAAACAATAGTGGATTATCGTTATTGTAGCCGAATAAAAAATGACTTACCTTTACAAATATAACAATACGATTTCATTCAGATATCTGTAGTTTACTATTTATAACAAACCATATCACACTAGTACTGTACTGTCCAAACTGAGACTTAGAGATGCACCGAAATATGTTCAAATTGAAGTTTTGTAATAGCCTTTTTCTTGAAAATGAAGACAAAATGAATTTgggctattttattaaaacagcactgctgaggttagTGTATCAATCAAATAGCACtattgaagtaaattcatgactaaaacagcactgctgaggttagTGTACCAGTcaaatagcactactgaagtaaattcatgactaaaacagcactgctgaggttagTGTATCAATCAAATAGCACtattgaagtaaattcatgactaaaacagcactgctgaggttagTGTATCAATCGAATAGCACTATtgaagtaaattcattattaaaaaagcaCTGTTGAGGtgaatACactgtgctt

Function

GO:

id name namespace
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0043292 contractile fiber cellular_component
GO:0044449 obsolete contractile fiber part cellular_component
GO:0030016 myofibril cellular_component
GO:0030017 sarcomere cellular_component

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU71901 True 4285 lncRNA 0.39 2 19269530 19301099

Neighbor

gene id symbol gene type direction distance location
LOC111192707 NA coding downstream 126250 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 528226 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 541297 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 579929 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 620655 18644455 ~ 18648875 (-)
LOC103025356 NA coding upstream 136534 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 304456 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 381292 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 601194 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 741398 20042497 ~ 20089372 (-)
G53234 NA non-coding downstream 50267 19218647 ~ 19219263 (-)
G53227 NA non-coding downstream 98455 19169849 ~ 19171075 (-)
LOC111192726 NA non-coding downstream 149155 19117466 ~ 19120375 (-)
G53209 NA non-coding downstream 341598 18927326 ~ 18927932 (-)
G53199 NA non-coding downstream 376653 18848729 ~ 18892877 (-)
G53316 NA non-coding upstream 3211 19304310 ~ 19331400 (-)
G53338 NA non-coding upstream 97716 19398815 ~ 19399208 (-)
G53342 NA non-coding upstream 131937 19433036 ~ 19433488 (-)
G53343 NA non-coding upstream 134584 19435683 ~ 19436089 (-)
LOC111192626 NA non-coding upstream 202511 19503610 ~ 19506504 (-)
G53164 NA other downstream 602243 18586401 ~ 18667287 (-)
G52652 NA other downstream 2679747 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2841917 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2912570 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 3042356 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 221603 19522702 ~ 19570378 (-)
G53382 NA other upstream 548851 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1320470 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1482639 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1516740 20817839 ~ 20819409 (-)

Expression


Co-expression Network