G53329


Basic Information

Item Value
gene id G53329
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19289383 ~ 19291513 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71916
ATCAACAATACAATCAGTACAGATTTAAATATCAGCACTAAAATTAGTACAGATGTACAATAAAACACTAACATCTGCAATAAAATACTTACAGATTTAAATATCAGCACTACAATTAGTACAGATTAAAATATCAGCTCTAAAATGAATATAGATGTACATAAAACTACTAAAACCAGTACAGATTTAAATATCAGCACTAAAATTAGTACAGATTTAAATATCAGCTCTAAAATGAATATAGATGTACATAAAACCACTAAAATCAGTACAGTTTTAAACCTTAGCACTAAAATCAGTACTGGGAGCAGAGAACAGGAACATCAAGAGTCCAGCCATGTCCTAAAACCAGTTCAGATTTAAATATCAGCACTAAAACCAGTTTAGCTTTACCAATCATATACAAAATCACATACCAGCACTaaaatcaacactaaaatctaaaCATGCTCAAAATGATTACAGTCCAGGACAGTCCAGCAGGCCATGTGATGTAGCTGCTAGGATTTCCGCTCAAGTGGCCCCTAAATAGAAGTGGAATATATGACGGAATATATAACTGCAGCGGGACACAGTTCAGGATCCAGTGTAACCAGAGCCCTGACATTCCTGGACCGTTAAAAGAGTCACTGGGAAGGGTCAGGGCCCTGTACCGCCACGATGAGCGCATCCCTCACGCCACAGGGCTTACCTCGGTGCCAGGCCGGGGTCTACGTGCCCTCACGTTTCGGGAATGACTGATATAGAAATACCTTTACGCTGCTTATTTATACCATTGTGTTGAACAATAGACGACATTATGAGGAACAATGCAGctttaatttggaatcagtatcAAAATAATGTGTCTTTGATGTCCAAAGCAAAGATAAAATAGTGTAAATGCCATATAAATACTGTGTAACAATatattttcaacatttattctgaatgaacacattattacacatatagagGAATGATAACCttcattttaaataactttttatataatttattcagttttctttgatgtgggggtgtttttttttgccacatcTATAGTACTGCCTGGTCAGGTTGCATAAtacttttaagtggtcttaaaGTTCAATGATTCAATGATTCATTTAGTTATTTTCATCAATTCTTTAGAAAAGAAAGCTATTTAAACATGTCCAAAAATgtcctgtccaccctgtcaatTGATAAGTGAGTTACTTTCCTTTAACAAAGTAACCTTTTACATCCCaagctttatattatttttaattttaattattttactttaattttaaagacTTGCTGCTGCATGattagcaattaataataataataataataataataataataataataataataataataataatagttttagATTGATACAAATTCTTTCGAAAGCCAATAGATGTAATGAACTCActgttgctgctctgtttgtagctgctctgtttggtttgtaagcactgcatcgttactaggttacctgtatgtggcggagtaatacatggagagcttcggttacagtgcattactggctgataacggcactcggAAAActcctcttagccaatcacattgcagggttggaaactaactgtggtattatAACTTGAGTAATAAATCTAAGGGGTTAATTAACGAGATGTTGTTGTAATTCACAACCCGAAGCACGTCATACGCATCAGTATAACGAGGTCCGGGTGAAAATAGCTGGTGTGTGTGGTGATCTGGTCCGAGCTCCGGCTGTACCCGGGTCTGTTCGGGTTACAGCGAGCAGGAGGAAGGCCAGGTAAACCCGAGCGCCTGCCCAGCGAGCACATTCCCAGCTGAACGCTAGCATGTGAGAATGGAATGTGCGGAGGTAATTACGGAATGTTCTGAGTACACTCTGCCACGGTTTGGTTCAACACGGCACTGGGGGAGTGTGAagagagtgtgaggagtgtgtgaggagtgtgtgagggggtTACAGGTAAGTCCAGCCAACACCTTTCCTATAATTAACCCTTgggtccttttttatttttattcatcattCTGTTTAGTACCTAGAGCTGGGAgatatattttgaatatatttgatattatctgacaaacaacaataacaaaa

Function

GO:

id name namespace
GO:0048731 system development biological_process
GO:0048738 cardiac muscle tissue development biological_process
GO:0072359 circulatory system development biological_process
GO:0007507 heart development biological_process
GO:0003007 heart morphogenesis biological_process
GO:0032501 multicellular organismal process biological_process
GO:0060537 muscle tissue development biological_process
GO:0014706 striated muscle tissue development biological_process

KEGG:

id description
ko04260 Cardiac muscle contraction
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
TU71916 True 2101 lncRNA 0.37 2 19289383 19291513

Neighbor

gene id symbol gene type direction distance location
LOC111192707 NA coding downstream 146103 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 548079 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 561150 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 599782 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 640508 18644455 ~ 18648875 (-)
LOC103025356 NA coding upstream 146120 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 314042 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 390878 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 610780 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 750984 20042497 ~ 20089372 (-)
G53326 NA non-coding downstream 2172 19284152 ~ 19287211 (-)
G53319 NA non-coding downstream 5905 19280736 ~ 19283478 (-)
G53234 NA non-coding downstream 70120 19218647 ~ 19219263 (-)
G53227 NA non-coding downstream 118308 19169849 ~ 19171075 (-)
LOC111192726 NA non-coding downstream 169008 19117466 ~ 19120375 (-)
G53321 NA non-coding upstream 76 19291589 ~ 19292998 (-)
G53320 NA non-coding upstream 2001 19293514 ~ 19296308 (-)
G53316 NA non-coding upstream 12797 19304310 ~ 19331400 (-)
G53338 NA non-coding upstream 107302 19398815 ~ 19399208 (-)
G53342 NA non-coding upstream 141523 19433036 ~ 19433488 (-)
G53164 NA other downstream 622096 18586401 ~ 18667287 (-)
G52652 NA other downstream 2699600 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 2861770 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 2932423 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 3062209 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 231189 19522702 ~ 19570378 (-)
G53382 NA other upstream 558437 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1330056 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1492225 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1526326 20817839 ~ 20819409 (-)

Expression


Co-expression Network