G53342


Basic Information

Item Value
gene id G53342
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19433036 ~ 19433488 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71933
cgccatatcatattgcccagctctaattTATATGAccattgattttattattatatttttttaagtgtgcaaTGGAATTGatgtactctgtatatatttCCTTGTTCGTGCTGTAAATAATGTTCATGACTGTAATATTAATATGGTATTCATATTAGGCTCTCAAGTGCACCAAATATCTGTGGAGAGAAGCTTGTTTAACCCCTGAAATcctgtatttattattcatattttaaccCGAAATCAGGCTGTAAAACTGTAACTGTTTTGTATTAAGCATTAAGTTAAGCATATCTTGATCGTGTGGAGTCCCACAGAGCTCAGTTTTAAGGCCTATAAAACTCATGTTAACAGCATACAGGGTTTAAAAGGGGTTAAAAGTCACTGTTCCTAAATGAAATGCACCACTTTTATACCatttactacactgtaaaatactgtattttgtgtgGG

Function

GO:

id name namespace
GO:0048568 embryonic organ development biological_process
GO:0048598 embryonic morphogenesis biological_process
GO:0009790 embryo development biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71933 True 453 lncRNA 0.33 1 19433036 19433488

Neighbor

gene id symbol gene type direction distance location
LOC111192707 NA coding downstream 289756 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 691732 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 704803 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 743435 18656832 ~ 18689601 (-)
nat9 nat9 coding downstream 784161 18644455 ~ 18648875 (-)
LOC103025356 NA coding upstream 4145 19437633 ~ 19459375 (-)
LOC103036701 LOC108430450 coding upstream 172067 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 248903 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 468805 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 609009 20042497 ~ 20089372 (-)
G53338 NA non-coding downstream 33828 19398815 ~ 19399208 (-)
G53316 NA non-coding downstream 101636 19304310 ~ 19331400 (-)
G53320 NA non-coding downstream 136728 19293514 ~ 19296308 (-)
G53321 NA non-coding downstream 140038 19291589 ~ 19292998 (-)
G53329 NA non-coding downstream 141523 19289383 ~ 19291513 (-)
G53343 NA non-coding upstream 2195 19435683 ~ 19436089 (-)
LOC111192626 NA non-coding upstream 70122 19503610 ~ 19506504 (-)
G53357 NA non-coding upstream 163287 19596775 ~ 19602402 (-)
G53358 NA non-coding upstream 166904 19600392 ~ 19655844 (-)
G53361 NA non-coding upstream 287654 19721142 ~ 19795467 (-)
G53164 NA other downstream 765749 18586401 ~ 18667287 (-)
G52652 NA other downstream 2843253 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3005423 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 3076076 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 3205862 16226236 ~ 16227174 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other upstream 89214 19522702 ~ 19570378 (-)
G53382 NA other upstream 416462 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1188081 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1350250 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1384351 20817839 ~ 20819409 (-)

Expression


Co-expression Network