LOC103025665 (glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346)


Basic Information

Item Value
gene id LOC103025665
gene name glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19522702 ~ 19570378 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71947
TGAAATTTATAAACCTAAaatcttaagttttttttttttttatgtatttttaacagcaacttTTTCACAACCTCACAAGTTCGAAACTTCAAAGTTTGAAAGTTCAAAAGTTTAAAACTTCAAAGTTCAAAAATTTGAAACTTCAAAGTTCAGAACTTCAAATGTATGAATTGCACCACTAAATATTCAGAGGTTAATCAAAAGTGAGGtcaatttattataaatatacagaatGCAGATAAAACCAATTTAAAATAGGTTATTTCCGCATTTTTAGGCTCCATTAACAAGTAGCCTCATGTCTGGAATAAACTGTATTCTGGCAGCATTGTTTTCTGCAGTACTTCATATTGTTCTGATGTAATTCTGAATGATAGAATGATCCGGTCTATCCTATCAAACAGCTGTGGTGGGGTTTTATATCAATCCGTTGTTGATTAATGTGATCCTCTCTTCTCCGTATTCAGAGCTATCTCTCCAGTATTGTCTGTTATTGGCTGTATTTTTCATTCTCAGTGGCGCAGTGTCAAACCAGCTTGGGTTGAGAGCGAGGCGAGGTGTTCGGTATTTGTGTTTTCTTCGTCGGTTCTCTGAACTAGCTTTAggttctgttttattttgagTCTGTGTCTTCCCAGCCCTCGTTAACCcctaactgtctgtctgtattagtgagaataaataaagacagcACTAAAGATGCCTTAGAGCCGAGAGCAGGAGTTTTATACTCAGAGGagttctttctttatttctttatttctttacccAGAGGTTCAGAACTGTTCCAGCCGTACCTGAAATCCGTCCAGCGTTCAGTATTTTGCTTTGGGGACATGCAGAATCtgaattctttattttaaaatgttttgatcGCCCATATCTCGCAGGGATCGGTTCCACAGGACACTGGGCGAGCCCTCAGTTAGATAGGTGTGATAGGTTAAGGCGACTTGTAGCTCGTTTGGGAACAAAACAATTCATAAAACTCATCTAGATCTTCATCTGGACAATTTGCTTTTGGAAATTTGTATTGCCTTTTTTG
>XM_022670332.1
ttcctctcctccctcaCTTCCCttatatacctctctctctttctctctctcttcggcAGCGCGTCGCTTCTTTATTTATCTCCTTCCAGAAGCTCCTGAAGGCTCGGAAAGCTTGTAAAGCCCCGCACCTCCACACGGCAACATGTACCGGTATCTCGGGGAGCTGCTGAGCCGCGGGGCGGGCAGTGCCCTGCTGGCCTCGGGGAGCGTCGAGTCCGCGCTGCCGGCTTCCTCCGCTCTGGCGCGGGTCCGCCACTACAGCGACGCCGCGGAGAAAGAGGACGACCCCAACTTCTTCAGGATGGTGGAGGGCTTCTTCGACCGCGGCGCGGCCATCGTGGAGAACAAGCTGGTGGAGGACCTGAAGACGCGGGAGTCGCCCGAGCAGAAGCGGCACAGGGTGCGGGGGATCCTGCGGATCATCAAGCCCTGCAACCACGTCCTCAGCGTGTCTTTCCCCATCAAGAGAGACAACGGCGAGTGGGAGGTTATCGAGGGCTACCGGGCGCAGCACAGCCAGCACAGGACTCCCTGCAAAGGGGGTATCCGATACAGCATGGACGTGTCAGTAGATGAAGTCAAAGCGTTGGCCTCTCTGATGACGTATAAATGTGCTGTTGTGGATGTGCCATTTGGAGGTGCTAAAGCTGGAGTCAAAATCAACCCCAGAAATTACTCTGACAATGAGTTGGAGAAAATCACTAGAAGATTCACCATTGAACTCGCCAAAAAGGGATTTATTGGACCTGGCATTGACGTGCCCGCCCCTGACATGAGCACCGGCGAGCGGGAGATGTCCTGGATCGCCGACACTTACGCCAACACTATCGCCCACACTGACATCAACGCTCACGCCTGTGTGACGGGAAAGCCCATCAGTCAGGGCGGCATCCACGGCCGAATCTCAGCCACGGGTCGCGGAGTTTTCCACGGCATCGAGAACTTCATCAACGAGGCGTCGTACATGAGCAAACTGGGCCTCACCCCCGGCTTCGCAGACAAGACCTTCATCATCCAGggTTTTGGAAACGTGGGTTTGCATTCCATGCGTTACCTCCATCGTTACGGTGCGAAGTGTGTGGGTATTGCTGAGATTGATGGAAGCATCTGGAACCCCAATGGCATCGACCCCAAGGAGCTGGAGGACTACAAACTGCAACACGGCACCATTGTAGGCTTCCCTAACGCTCAGCCGTATGAAGGAAACATCATGGAGGCTCAGTGTGATATCCTCATCCCTGCCGCAGGAGAGAAGCAGCTCACCAGGAAAAACGCTCACAACATCAAAGCCAAGATCATTGCTGAAGGTGCCAATGGGCCCACCACCCCTGATGCTGACAAGATCTTCCTGGAGAAGAATGTCATGGTTATCCCGgaCATGTACCTCAATGCTGGTGGTGTGACCGTCTCCTACTTCGAGTGGCTGAAGAACCTGAACCACGTCAGCTACGGTCGCCTGACCTTCAAGTATGAGCGGGATTCCAACTACCACCTGCTGATGTCTGTGCAGGAGAGTCTTGAGAGGAAGTTCGGAAAACAAGGTGGTCCCATCCCTGTGGTCCCAACTGCTGAATTCCAGGCCAGAGTGGCTggtGCTTCTGAGAAGGACATTGTGCACTCTGGTCTTGCCTACACTATGGAGAGATCTGCAAGGcaAATCATGCGCACAGCCAACAAGTACAACCTGGGCTTGGACCTGAGGACGGCAGCTTACGTCAACGCCATTGAGAAGGTGTTCAAGGTCTACAACGAGGCCGGCCTGACCTTCACATAAACCTCCTCACATTTATtcccttatttttcttttcctttttttttttttttttttacctcttccTCCTTGTTCCCGCCCTGTTCCAGCCCTGTtccagccccgccctcctcccTGTtccagccccgccctcctcccTGTTCCAGCCCCGTCCACTTTCTGTCTCTACCCCACTGTTCCAGCCCCACCTTTTGACATATCAGGAGTTTACAGGAGTTCAGCCCTAAACTCTATACTGTCTGAAACACTAGAGTTAATTAGATTAATACCTCCAGGCTCACCTTCACGCAGCCTGAAACATGTTCACACACAGTTTTCACAACATCTCTGCTCCATTCGTTCCATTCTGAGACTGTAGGTTTAATATTCGGCTCTACTGTACGACAAATATGGAGCTTAAAAGCTAAAACAAGTATTTGAATCTGCATTTTgcatattttacttaaattaaaccTGACTTTTGATTAACGTTGAATTACTTTTCATGCTGtaaatcatacattttttatttcaaaaatgccttttttgtgatttttgaaCCTTTTGAGGTGTTGAAACttgctggagaaaaaaaatacaatttaataaaactaattttttttccttttccataCATTTTCAGATCATAAAACTTAAATCTgtcttattttgagttcaaatacCTTTAAACTGATGGATCTgagtttttaaatcttaaataaaactatGGATCTGAAATTTATAAACCTAAaatcttaagttttttttttttttatgtatttttaacagcaacttTTTCACAACCTCACAAGTTCGAAACTTCAAAGTTTGAAAGTTCAAAAGTTTAAAACTTCAAAGTTCAAAAATTTGAAACTTCAAAGTTCAGAACTTCAAATGTATGAATTGCACCACTAAATATTCAGAGGTTAATCAAAAGTGAGGtcaatttattataaatatacagaatGCAGATAAAACCAATTTAAAATAGGTTATTTCCGCATTTTTAGGCTCCATTAACAAGTAGCCTCATGTCTGGAATAAACTGTATTCTGGCAGCATTGTTTTCTGCAGTACTTCATATTGTTCTGATGTAATTCTGAATGATAGAATGATCCGGTCTATCCTATCAAACAGCTGTGGTGGGGTTTTATATCAATCCGTTGTTGATTAATGTGATCCTCTCTTCTCCGTATTCAGAGCTATCTCTCCAGTATTGTCTGTTATTGGCTGTATTTTTCATTCTCAGTGGCGCAGTGTCAAACCAGCTTGGGTTGAGAGCGAGGCGAGGTGTTCGGTATTTGTGTTTTCTTCGTCGGTTCTCTGAACTAGCTTTAggttctgttttattttgagTCTGTGTCTTCCCAGCCCTCGTTAACCcctaactgtctgtctgtattagtgagaataaataaagacagcACTAAAGATGCCTTAGAGCCGAGAGCAGGAGTTTTATACTCAGAGGagttctttctttatttctttatttctttacccAGAGGTTCAGAACTGTTCCAGCCGTACCTGAAATCCGTCCAGCGTTCAGTATTTTGCTTTGGGGACATGCAGAATCtgaattctttattttaaaatgttttgatcGCCCATATCTCGCAGGGATCGGTTCCACAGGACACTGGGCGAGCCCTCAGTTAGATAGGTGTGATAGGTTAAGGCGACTTGTAGCTCGTTTGGGAACAAAACAATTCATAAAACTCATCTAGATCTTCATCTGGACAATTTGCTTTTGGAAATTTGTATTGCCTTTTTTGTTGACaataaaaaatgacaacaaata

Function

symbol description
glud1b Predicted to enable glutamate dehydrogenase (NAD+) activity. Predicted to be involved in glutamate catabolic process. Predicted to act upstream of or within cellular amino acid metabolic process. Predicted to be active in mitochondrion. Is expressed in several structures, including blastomere; digestive system; fin; mesoderm; and tail bud. Human ortholog(s) of this gene implicated in familial hyperinsulinemic hypoglycemia 6; hyperinsulinism; hypoglycemia; and late onset Parkinson's disease. Orthologous to several human genes including GLUD1 (glutamate dehydrogenase 1).

NR:

description
PREDICTED: glutamate dehydrogenase, mitochondrial

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0006520 cellular amino acid metabolic process biological_process
GO:0016639 oxidoreductase activity, acting on the CH-NH2 group of donors, NAD or NADP as acceptor molecular_function

KEGG:

id description
K00261 GLUD1_2, gdhA; glutamate dehydrogenase (NAD(P)+)

RNA

RNA id representative length rna type GC content exon number start site end site
TU71947 False 1045 lncRNA 0.37 1 19522728 19523772
XM_022670332.1 True 3554 mRNA 0.46 13 19522702 19570378

Neighbor

gene id symbol gene type direction distance location
LOC103025356 NA coding downstream 63327 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 379422 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 781398 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 794469 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 833101 18656832 ~ 18689601 (-)
LOC103036701 LOC108430450 coding upstream 35177 19605555 ~ 19670670 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 112013 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 331915 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 472119 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 732157 20302535 ~ 20302628 (-)
LOC111192626 NA non-coding downstream 16198 19503610 ~ 19506504 (-)
G53343 NA non-coding downstream 86613 19435683 ~ 19436089 (-)
G53342 NA non-coding downstream 89214 19433036 ~ 19433488 (-)
G53338 NA non-coding downstream 123494 19398815 ~ 19399208 (-)
G53316 NA non-coding downstream 191302 19304310 ~ 19331400 (-)
G53357 NA non-coding upstream 26397 19596775 ~ 19602402 (-)
G53358 NA non-coding upstream 30014 19600392 ~ 19655844 (-)
G53361 NA non-coding upstream 150764 19721142 ~ 19795467 (-)
G53372 NA non-coding upstream 228807 19799185 ~ 19799391 (-)
G53374 NA non-coding upstream 234006 19804384 ~ 19804714 (-)
G53164 NA other downstream 855415 18586401 ~ 18667287 (-)
G52652 NA other downstream 2932919 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3095089 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 3165742 16343756 ~ 16356960 (-)
G52503 polr2a other downstream 3295528 16226236 ~ 16227174 (-)
G53382 NA other upstream 279572 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 1051191 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1213360 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1247461 20817839 ~ 20819409 (-)
G53996 NA other upstream 3520928 23091306 ~ 23091975 (-)

Expression


Co-expression Network