G53358


Basic Information

Item Value
gene id G53358
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19600392 ~ 19655844 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71957
tttatttatttgatttttaaaaacaaacaaaatatggaTATGATATTTGTTTCACCTTAAAATTGCATTGATCTGATGTTTTAAAACCTGAACATTTATGGAAACCTAAGACCTGatattttaaatctaaaaattgTATGACTCTCATTATTAACTTAAGTTATATTAAATATCACCTCAAAAGCTGAAACAATTAAAGTAAGGTTAGCATTAATTTTGTAAAGATTGGTTAAGATTCTTTTGGGAAATGCAGCTCAGATCAGTGTTGTGTTATCATCTATATGAGGGTATTTTGTCCTGTGAAAGTCTGTATTGATCAGCTTTTGAAGCCTTATACTCACATCTGCTGATTCTGTGCATTTATAGATATGGGTATAGATATTATTATTGATCTGTTATAGTCTATTGGAACTTGTATGGGAACCAGATAGAAGATtgtata

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71957 True 442 lncRNA 0.28 2 19600392 19655844

Neighbor

gene id symbol gene type direction distance location
LOC103025356 NA coding downstream 141017 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 457112 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 859088 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 872159 18696994 ~ 18728233 (-)
LOC103024498 ndel1a,LOC108430325,LOC107706877,LOC107698805,LOC107582761,LOC107700135 coding downstream 910791 18656832 ~ 18689601 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding upstream 26547 19682391 ~ 19839582 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 246449 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 386653 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 646691 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 660172 20316016 ~ 20392206 (-)
LOC111192626 NA non-coding downstream 93888 19503610 ~ 19506504 (-)
G53343 NA non-coding downstream 164303 19435683 ~ 19436089 (-)
G53342 NA non-coding downstream 166904 19433036 ~ 19433488 (-)
G53338 NA non-coding downstream 201184 19398815 ~ 19399208 (-)
G53316 NA non-coding downstream 268992 19304310 ~ 19331400 (-)
G53361 NA non-coding upstream 65298 19721142 ~ 19795467 (-)
G53372 NA non-coding upstream 143341 19799185 ~ 19799391 (-)
G53374 NA non-coding upstream 148540 19804384 ~ 19804714 (-)
G53375 NA non-coding upstream 150451 19806295 ~ 19806499 (-)
G53376 NA non-coding upstream 151899 19807743 ~ 19808014 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 30014 19522702 ~ 19570378 (-)
G53164 NA other downstream 933105 18586401 ~ 18667287 (-)
G52652 NA other downstream 3010609 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3172779 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 3243432 16343756 ~ 16356960 (-)
G53382 NA other upstream 194106 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 965725 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 1127894 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1161995 20817839 ~ 20819409 (-)
G53996 NA other upstream 3435462 23091306 ~ 23091975 (-)

Expression


Co-expression Network