G53372


Basic Information

Item Value
gene id G53372
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19799185 ~ 19799391 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71972
aaagctgtgcacctcagtccagcacagttttgcagtgcagatatttccagttacagctgaattcacgcttttaatcccagaaaaacaaacgctcttatttaccttttaaaaagctatttaaatgtctgattaaagggctgattactgttgttttgctgtttttctcggcTTTTGAGAGCTCggcactgactcagctcttgattggtc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71972 True 207 lncRNA 0.40 1 19799185 19799391

Neighbor

gene id symbol gene type direction distance location
LOC103036701 LOC108430450 coding downstream 128515 19605555 ~ 19670670 (-)
LOC103025356 NA coding downstream 339810 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 655905 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 1057881 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 1070952 18696994 ~ 18728233 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 102902 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 243106 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 503144 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 516625 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 742473 20541864 ~ 20556330 (-)
G53361 NA non-coding downstream 3718 19721142 ~ 19795467 (-)
G53358 NA non-coding downstream 143341 19600392 ~ 19655844 (-)
G53357 NA non-coding downstream 196783 19596775 ~ 19602402 (-)
LOC111192626 NA non-coding downstream 292681 19503610 ~ 19506504 (-)
G53343 NA non-coding downstream 363096 19435683 ~ 19436089 (-)
G53374 NA non-coding upstream 4993 19804384 ~ 19804714 (-)
G53375 NA non-coding upstream 6904 19806295 ~ 19806499 (-)
G53376 NA non-coding upstream 8352 19807743 ~ 19808014 (-)
G53379 NA non-coding upstream 34590 19833981 ~ 19834366 (-)
G53380 NA non-coding upstream 49429 19848820 ~ 19849065 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 228807 19522702 ~ 19570378 (-)
G53164 NA other downstream 1131898 18586401 ~ 18667287 (-)
G52652 NA other downstream 3209402 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3371572 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 3442225 16343756 ~ 16356960 (-)
G53382 NA other upstream 50559 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 822178 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 984347 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 1018448 20817839 ~ 20819409 (-)
G53996 NA other upstream 3291915 23091306 ~ 23091975 (-)

Expression


Co-expression Network