G53379


Basic Information

Item Value
gene id G53379
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19833981 ~ 19834366 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71980
tgcaggtcttgctggagcatctgtgaccaagacagcaagtctttgtgatgcatcaagagccacggtatccagggtaatgtcagcataccaccaagaagaaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgcttacccggattgtatccaataaaaaacagaaaccacggctgatcaaatcacagcagaattcaatgtgcacctcaactctaccTCAACTCTAGCTGATGATGTAGTTCAGATGGACTGCAGGTTCAGAATGAGGAACTGCATAGAAGTGAATTGGTGGTAGAGGATGGGTGTGTAGTTGAAGAGTGACTCTGCACACAGTGCATCTCAGTCAGGCGT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71980 True 386 lncRNA 0.47 1 19833981 19834366

Neighbor

gene id symbol gene type direction distance location
LOC103036701 LOC108430450 coding downstream 163311 19605555 ~ 19670670 (-)
LOC103025356 NA coding downstream 374606 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 690701 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 1092677 18730043 ~ 18741304 (-)
LOC103028095 itgb3b,itgb3,LOC108430317,LOC107698806,LOC107706862 coding downstream 1105748 18696994 ~ 18728233 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 67927 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 208131 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 468169 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 481650 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 707498 20541864 ~ 20556330 (-)
G53376 NA non-coding downstream 25967 19807743 ~ 19808014 (-)
G53375 NA non-coding downstream 27482 19806295 ~ 19806499 (-)
G53374 NA non-coding downstream 29267 19804384 ~ 19804714 (-)
G53372 NA non-coding downstream 34590 19799185 ~ 19799391 (-)
G53361 NA non-coding downstream 38514 19721142 ~ 19795467 (-)
G53380 NA non-coding upstream 14454 19848820 ~ 19849065 (-)
G53384 NA non-coding upstream 43128 19877494 ~ 19877718 (-)
G53462 NA non-coding upstream 173581 20007947 ~ 20008162 (-)
G53467 NA non-coding upstream 198488 20032854 ~ 20033088 (-)
G53457 NA non-coding upstream 198997 20033363 ~ 20034632 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 263603 19522702 ~ 19570378 (-)
G53164 NA other downstream 1166694 18586401 ~ 18667287 (-)
G52652 NA other downstream 3244198 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3406368 16406719 ~ 16427613 (-)
LOC111192725 NA other downstream 3477021 16343756 ~ 16356960 (-)
G53382 NA other upstream 15584 19849950 ~ 19850350 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 787203 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 949372 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 983473 20817839 ~ 20819409 (-)
G53996 NA other upstream 3256940 23091306 ~ 23091975 (-)

Expression


Co-expression Network