G53384


Basic Information

Item Value
gene id G53384
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 19877494 ~ 19877718 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU71985
gtatcaagagccacggtatccagggtaatgtcagcataccaccaagaagaaccaaccacatccaacaggattaactgtggacgctgtaagaggaagctgtctgaaagggatgttcgggtgctaacccggattgtatccaaaaaacataaaaccacggcggatcaaatcacgcagaattcaatgtgcacctcaactctcctgtttccaccagaactgtccgtcacc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU71985 True 225 lncRNA 0.48 1 19877494 19877718

Neighbor

gene id symbol gene type direction distance location
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding downstream 37912 19682391 ~ 19839582 (-)
LOC103036701 LOC108430450 coding downstream 206824 19605555 ~ 19670670 (-)
LOC103025356 NA coding downstream 418119 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 734214 19122620 ~ 19143280 (-)
LOC111192624 LOC108430317 coding downstream 1136190 18730043 ~ 18741304 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding upstream 24575 19902293 ~ 19906073 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 164779 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 424817 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 438298 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 664146 20541864 ~ 20556330 (-)
G53380 NA non-coding downstream 28429 19848820 ~ 19849065 (-)
G53379 NA non-coding downstream 43128 19833981 ~ 19834366 (-)
G53376 NA non-coding downstream 69480 19807743 ~ 19808014 (-)
G53375 NA non-coding downstream 70995 19806295 ~ 19806499 (-)
G53374 NA non-coding downstream 72780 19804384 ~ 19804714 (-)
G53462 NA non-coding upstream 130229 20007947 ~ 20008162 (-)
G53467 NA non-coding upstream 155136 20032854 ~ 20033088 (-)
G53457 NA non-coding upstream 155645 20033363 ~ 20034632 (-)
G53458 NA non-coding upstream 157048 20034766 ~ 20035491 (-)
G53456 NA non-coding upstream 159401 20037119 ~ 20041892 (-)
G53382 NA other downstream 27144 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 307116 19522702 ~ 19570378 (-)
G53164 NA other downstream 1210207 18586401 ~ 18667287 (-)
G52652 NA other downstream 3287711 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3449881 16406719 ~ 16427613 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 743851 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 906020 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 940121 20817839 ~ 20819409 (-)
G53996 NA other upstream 3213588 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 4463682 24341400 ~ 24351936 (-)

Expression


Co-expression Network