G53456


Basic Information

Item Value
gene id G53456
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20037119 ~ 20041892 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72087
acagtacaatataatacagtacagtacagtttaaTGTAAAGTTTCCAGTTCTTCAGGACTCTCAGGGTCTGTTCACACACCTGGCCTTAATATACGTTTTTTGTGTCTGGACGATaacggccaaaaaaaaaaaaacattgctgtagTTTTTTGGTCTGTTGTATAAAGAATATTGCATTATGTATCTAAAATCACAGGATTTTCACCAGattttaacagaagtcaatgatccaacttGTTGGCATACAAGATTATGACTATTATATCAAagattaaagtaaaagaaattataattgtctgatataatctgtctctcgTAGATATTTCATCGAAAATGAAAACggtgtgaattttccttttgttcCAACGAGAaactccatccacatggttgggcacgtgcttgtaaatgtgagcacgtgttgaaagctgtgcacctcagtccagcacagttttgcagcgcagatatttccaattacagctgaattcacgcttttaattccagaaaaacaaacgctcttatttacctattaaaaagccatttaaatgcctttttttggggaaaaaagaacatttgcaatgtaaaaatgttcCAATATCATTCAGCAGCCCTAGTTTACGAGTTCCTGCACAAGCTAGGTATGTAGGGTATGCATCTAAGTGAAGTCTATGGTAGATTTAATGCTGGAATAAAAATTGGCCTTTACGCAGAGCGGAAACGCTGTTTAGTGATTCGAGCTAaaggatgaaaccgaaacttcacgtgaagcgctGCTGCTGTTCATATGAGCATTAGTTACACGGCGTGTAAATGTCAGGCAAATGTCACacgtcacataaaaaaaaaaaatggtgtgaACAGCCTAAAACAAACATTAGGTTGGGtgagaaaaacagattttttgcagtgcagatatttccagttacagctgaattcacgctttaaatcccagaaaaacacttatcttatttaccttttaaaaagcctttttttttttttttttgggacaaaAGATCATTTGCAATGTCAAAATtgtccaatatcgtgcagccctagtttacAAGTTCTTGCACAAGCTCTATCAGACAATTCGAAGAATTCAAAGCTgttttatacttctgcgtcaaGTCAAAAGCAGAGTCTGTACACAGCGTAGGCTGTACAAAAGGCCTACGCTACTGTTAGTGTTTATACTGTGTAGTTAAACCATGAAGGTGGGAATGTGTAGGTGGGAACACAAGGCttggtggaccaatcacagctgctgctgtctgcgTCACGTAGTTACATTTACATCTTTAGAGCTGCGAGTCAGGATGTGTCAGGGTATTTGTAAATGTAGACTATGGTGTAgattaaatgcaaaaataaaaATTGGCTTTTACATATAGTGTGAACGCTGTTTAGTGATTCAGGCTAaaggatgaaaccgaaacttcacatgAAGCGCTGCTGAGCACCAGTTATACAGTGTGAACAGCCTGAAACATTGGGTTTGGTAAGAAAATCTCACCAGATTTAGAGCCTtttcacctgctgtgtgaaccgGTGGGGGTTCTATTATGGTTCTATGACTTGGTATTTAAATCACAAGAGAACTTTCTCTACTGCTTTCATCTGTTGATAAGCACTCatttacaccacacacacacccatatacatacatacatacacacacacacacaccccccacACTGTGAGGAGGCTAGAGGGAGAAAACCCAAGAtacgttttatatttattcttattaatgcAAGTAAAATCATCTGAAAATGATCCGGTCTTTAAAACGTATTTTaataccaggtgtaaacagtctctaaaacagatttattttatttatatttgcatttacatttttcctcAATTCCATTTAGGAAATTTACAACTTGACACCATTCGATTAATcaatctttttttagtttttttagaaaGACAAAGTTTGAACTGAAGAACTGGATTAAAAATAtctacttttacatttaaaatctcTGCATCCATTTCTTTCTGCTCCTCCCGTTCTTGCTTTTATCCcgttcctcctcttcctcctgcagttTTCTCTTTGCTCTCTTTTCATTACTGCTCCTCCATTACTGTGGTTGCTCCATCAAATTGCCTTTTGCCTTttgagtttgtttttgtttttcttttaatgaaaatat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72087 True 2163 lncRNA 0.37 2 20037119 20041892

Neighbor

gene id symbol gene type direction distance location
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding downstream 131046 19902293 ~ 19906073 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding downstream 197537 19682391 ~ 19839582 (-)
LOC103036701 LOC108430450 coding downstream 366449 19605555 ~ 19670670 (-)
LOC103025356 NA coding downstream 577744 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 893839 19122620 ~ 19143280 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding upstream 605 20042497 ~ 20089372 (-)
trnai-uau_7 NA coding upstream 260643 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 274124 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 499972 20541864 ~ 20556330 (-)
LOC103047390 NA coding upstream 520379 20562271 ~ 20568195 (-)
G53458 NA non-coding downstream 1628 20034766 ~ 20035491 (-)
G53457 NA non-coding downstream 2487 20033363 ~ 20034632 (-)
G53467 NA non-coding downstream 4031 20032854 ~ 20033088 (-)
G53462 NA non-coding downstream 28957 20007947 ~ 20008162 (-)
G53384 NA non-coding downstream 159401 19877494 ~ 19877718 (-)
G53469 NA non-coding upstream 18007 20059899 ~ 20130157 (-)
G53470 NA non-coding upstream 48986 20090878 ~ 20100795 (-)
G53473 NA non-coding upstream 62014 20103906 ~ 20112140 (-)
G53502 NA non-coding upstream 271236 20313128 ~ 20314046 (-)
G53500 NA non-coding upstream 272402 20314294 ~ 20315583 (-)
G53382 NA other downstream 186769 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 466741 19522702 ~ 19570378 (-)
G53164 NA other downstream 1369832 18586401 ~ 18667287 (-)
G52652 NA other downstream 3447336 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3609506 16406719 ~ 16427613 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 579677 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 741846 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 775947 20817839 ~ 20819409 (-)
G53996 NA other upstream 3049414 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 4299508 24341400 ~ 24351936 (-)

Expression


Co-expression Network