G53469


Basic Information

Item Value
gene id G53469
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20059899 ~ 20130157 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72101
ctaggtgtcagaaacggaccaaagagtctaaaagcggagagggtgcgcatttctagcgcagaaaaacgggccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaatggaccaaagagtctaaaagcggagagggtgtgcatttctagctctaaaaaacggccaaagagtctaaaagcggagagagtgcacatttctagcgcagaaaaatggaccaaagagtctaaaagcggagagggtgcgcatttctagcgcagaaaaacggaccaaagagtctaaaagcggagagagtgcgcagttgtagcgcagaaaaatggagcaaaaaaatctataagcagagagtgcgcagttgtagcgcagaaaaacgggcc
>TU72102
catttctagcgcaaaaaaacagccaaagagtctaaaagcggagagagtgcgcatttctagcgcagaaaaatggaccaaagagtctaaaagcggagagggtgtgcatttctagctctaaaaaacggccaaagagtctaaaagcggagagagtgcacatttctagcgcagaaaaatggaccaaagagtctaaaagcggagagggtgcgcatttctagcgcagaaaaacggaccaaagagtctaaaagcggagagagtgcgcagttgtagcgcagaaaaatggagcaaaaaaatctataagcagagagtgcgcagttgtagcgcagaaaaacgggcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72101 True 382 lncRNA 0.48 3 20059899 20130157
TU72102 False 334 lncRNA 0.46 2 20059899 20115999

Neighbor

gene id symbol gene type direction distance location
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding downstream 153826 19902293 ~ 19906073 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding downstream 220317 19682391 ~ 19839582 (-)
LOC103036701 LOC108430450 coding downstream 389229 19605555 ~ 19670670 (-)
LOC103025356 NA coding downstream 600524 19437633 ~ 19459375 (-)
LOC111192707 NA coding downstream 916619 19122620 ~ 19143280 (-)
trnai-uau_7 NA coding upstream 172378 20302535 ~ 20302628 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 185859 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 411707 20541864 ~ 20556330 (-)
LOC103047390 NA coding upstream 432114 20562271 ~ 20568195 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding upstream 442255 20572412 ~ 20580604 (-)
G53456 NA non-coding downstream 18007 20037119 ~ 20041892 (-)
G53458 NA non-coding downstream 24408 20034766 ~ 20035491 (-)
G53457 NA non-coding downstream 25267 20033363 ~ 20034632 (-)
G53467 NA non-coding downstream 26811 20032854 ~ 20033088 (-)
G53462 NA non-coding downstream 51737 20007947 ~ 20008162 (-)
G53502 NA non-coding upstream 182971 20313128 ~ 20314046 (-)
G53500 NA non-coding upstream 184137 20314294 ~ 20315583 (-)
G53499 NA non-coding upstream 212238 20342395 ~ 20352851 (-)
G53554 NA non-coding upstream 413447 20543604 ~ 20550201 (-)
G53559 NA non-coding upstream 476620 20606777 ~ 20607592 (-)
G53382 NA other downstream 209549 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 489521 19522702 ~ 19570378 (-)
G53164 NA other downstream 1392612 18586401 ~ 18667287 (-)
G52652 NA other downstream 3470116 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3632286 16406719 ~ 16427613 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 491412 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 653581 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 687682 20817839 ~ 20819409 (-)
G53996 NA other upstream 2961149 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 4211243 24341400 ~ 24351936 (-)

Expression


Co-expression Network