G53499


Basic Information

Item Value
gene id G53499
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20342395 ~ 20352851 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72136
ttttggcagtgtgggcagtgtgccaaatcctgctggaaaatgaaatccacatctccataaaatccacatctccataaaatccACACCGCACTGACTTTGGGCTTGGGCTTTGaacagatgacatgtctctccaaaccatcactgatcatcagtaaattttacatttcatttgtaaatcaagggagcagagtctggaggaagagtggagagacacacagtccaaactgctcgaggtctagtgtgaagtttccaccaatcggtgatggtttggagagacatgtcatctgctggtgttgatccactgtgttttattatcaagtctaaagtcag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72136 True 330 lncRNA 0.44 2 20342395 20352851

Neighbor

gene id symbol gene type direction distance location
trnai-uau_7 NA coding downstream 39767 20302535 ~ 20302628 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding downstream 253023 20042497 ~ 20089372 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding downstream 436322 19902293 ~ 19906073 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding downstream 502813 19682391 ~ 19839582 (-)
LOC103036701 LOC108430450 coding downstream 671725 19605555 ~ 19670670 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 189013 20541864 ~ 20556330 (-)
LOC103047390 NA coding upstream 209420 20562271 ~ 20568195 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding upstream 219561 20572412 ~ 20580604 (-)
LOC103027095 LOC108274166 coding upstream 631608 20984459 ~ 21384885 (-)
LOC103044518 LOC108430683 coding upstream 1302766 21655617 ~ 21669948 (-)
G53500 NA non-coding downstream 26812 20314294 ~ 20315583 (-)
G53502 NA non-coding downstream 28349 20313128 ~ 20314046 (-)
G53469 NA non-coding downstream 212238 20059899 ~ 20130157 (-)
G53473 NA non-coding downstream 230255 20103906 ~ 20112140 (-)
G53470 NA non-coding downstream 241600 20090878 ~ 20100795 (-)
G53554 NA non-coding upstream 190753 20543604 ~ 20550201 (-)
G53559 NA non-coding upstream 253926 20606777 ~ 20607592 (-)
G53563 NA non-coding upstream 267872 20620723 ~ 20646509 (-)
G53556 NA non-coding upstream 283455 20636306 ~ 20637291 (-)
G53573 NA non-coding upstream 402782 20755633 ~ 20755885 (-)
G53382 NA other downstream 492045 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 772017 19522702 ~ 19570378 (-)
G53164 NA other downstream 1675108 18586401 ~ 18667287 (-)
G52652 NA other downstream 3752612 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3914782 16406719 ~ 16427613 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 268718 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 430887 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 464988 20817839 ~ 20819409 (-)
G53996 NA other upstream 2738455 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 3988549 24341400 ~ 24351936 (-)

Expression


Co-expression Network