G53502


Basic Information

Item Value
gene id G53502
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20313128 ~ 20314046 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72139
ctGAAATTGATTTGAATTCATTGATTAATGAAATTAGACGACTAAacctaatccctgtctgggaatctgaatttaaatatgtttaaacttaatttcatgTTCAACTGTAAGCAATAGCAGTAATGTTCCTGAGTcttagaatatattttaatctataaacattGTCTCTTTAGCGTAAtgaatttgaatttatttaCCGTAATTTTTGGACTATATGGCGCACCGTATCATAAGGCGTATCATCAGTGAACATCTCTTTTCATACAGTGGGTttggggggtagctaactaagttaagcaaagctaagctaagtaaacaaaactgtaattaaaaaaagagtttattttaaagttaaacgagcgctgaacgttaatctacacagatttctctcctgaaaactgtttatttgggtgagtaaagtgcttccgtttatttacagtaagcttagagtcacgaatttctccagcactaagtctggagcattagcattagcggctaactgctagcagttaaaccaatcagtgtgcaagtcatcattccctttaagaggcaggtgcgctctgacttttgCACGCTCGTTATTGTAACAGCGATTTGTGCGTCTCAGTAGAGGAAATTGACCTGTGCGTTCACtgtgtgaagatacaccagcagctcatttaagggaaagGCAGTGttaatggggtgtaagataggaatgagCCTCGTGAtgcgccttgcacagggtgtacaatagggcccaatGTCTTTAAATGTAAGAAAGTGTGTGTCAGACTTTCAAAGGAATCTTTTCAAAGTCTTCTAATGCCCACACGTTAAACACAAAGCCAAATCCAGTCCGACCCGCAAAATAATTTTAGTATTCTATTAATATTGGCCTGTATTATACTCTGGCCCTGAACTACAATCCCCCAGCATG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72139 True 919 lncRNA 0.38 1 20313128 20314046

Neighbor

gene id symbol gene type direction distance location
trnai-uau_7 NA coding downstream 10500 20302535 ~ 20302628 (-)
LOC103035481 ppm1bb,LOC108430462,LOC107749348,LOC107739221,LOC107698817,LOC107582773,LOC108273990,LOC107550052,LOC107700122 coding downstream 223756 20042497 ~ 20089372 (-)
LOC103035166 six3b,LOC103035166,LOC108429305,LOC107550037,LOC107698799,LOC107582771,LOC107749382,LOC107739239 coding downstream 407055 19902293 ~ 19906073 (-)
LOC103034301 prkcea,LOC108430457,LOC108274197,LOC107550054,LOC107739250,LOC107698816 coding downstream 473546 19682391 ~ 19839582 (-)
LOC103036701 LOC108430450 coding downstream 642458 19605555 ~ 19670670 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding upstream 1970 20316016 ~ 20392206 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding upstream 227818 20541864 ~ 20556330 (-)
LOC103047390 NA coding upstream 248225 20562271 ~ 20568195 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding upstream 258366 20572412 ~ 20580604 (-)
LOC103027095 LOC108274166 coding upstream 670413 20984459 ~ 21384885 (-)
G53469 NA non-coding downstream 182971 20059899 ~ 20130157 (-)
G53473 NA non-coding downstream 200988 20103906 ~ 20112140 (-)
G53470 NA non-coding downstream 212333 20090878 ~ 20100795 (-)
G53456 NA non-coding downstream 271236 20037119 ~ 20041892 (-)
G53458 NA non-coding downstream 277637 20034766 ~ 20035491 (-)
G53500 NA non-coding upstream 248 20314294 ~ 20315583 (-)
G53499 NA non-coding upstream 28349 20342395 ~ 20352851 (-)
G53554 NA non-coding upstream 229558 20543604 ~ 20550201 (-)
G53559 NA non-coding upstream 292731 20606777 ~ 20607592 (-)
G53563 NA non-coding upstream 306677 20620723 ~ 20646509 (-)
G53382 NA other downstream 462778 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 742750 19522702 ~ 19570378 (-)
G53164 NA other downstream 1645841 18586401 ~ 18667287 (-)
G52652 NA other downstream 3723345 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 3885515 16406719 ~ 16427613 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other upstream 307523 20621569 ~ 20690422 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 469692 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 503793 20817839 ~ 20819409 (-)
G53996 NA other upstream 2777260 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 4027354 24341400 ~ 24351936 (-)

Expression


Co-expression Network