G53531


Basic Information

Item Value
gene id G53531
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20562311 ~ 20563241 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72172
AGTCCATTGTCTGCTCATTAGATTAAATGCTTACTTTCACATACAAAAGcatgacattacattacactacatttagcaatagaggacatagaagttaAAGGCAAAAAGACAGGGCCTAAAAGACACCAAAGGGAAAATAGTAggatagaggaggagagggaaaggagggaaagaggttagaagtagttagtttggtagttagaggtgttaggagagtaggtgctctttgaagagctcagtcttcaggagtttattaaagatagtgagggacgctACTGAGGGAGATTAGGAGGTTGTGGTTATGGTGTTGAAAGTTGTGTTGAAAGTATTGTTGTGAAGCAATCATCAAAAACccacagattaaaaaaaaaactatctttttacaccattttcttttctgtgttctgtctcaTGCCATGCAGCAAAGCAGTTTCTGTCCAGCTGCAGGCACAGGGCAACGTCACACTTACTGCACTTCCAAGGTGTGTCTTTTCGCCTACCTTGGCTTTGGCAATGTTCACACCTCCtgcgacctgtggtggctttatCACTGGGAGTTGCTGATTGGAGATTGCTAATGGCCACGGGAACATGATCTGCTGGTGACTTTGCAGAGGACTTTGTGAGGAGAGGTCTGCCGCAGAGCTCAGAGGTCAGCTTCTCTAAGAAAGCTCTTTGTGTCAGGGGTTGTTTCTCTTGGGCTAGGCAGAGCTCTTTGTGGAGAATGAAGCTGTTGGTTGTGGCGATGTCCAGAAAGTGGTAAAACATCTTCCTGTACCAGCGCATGGTTTTGTGTTGTGCTGAATAATACTGAATGAGTTGGTCTGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72172 True 828 lncRNA 0.44 2 20562311 20563241

Neighbor

gene id symbol gene type direction distance location
rhoq rhoq,LOC107550049,LOC107582780 coding upstream 18774 20493169 ~ 20543537 (+)
LOC103045569 kcng3,LOC108430560,LOC108273984,LOC107749354,LOC107728707 coding upstream 154549 20394713 ~ 20407762 (+)
LOC103045864 NA coding upstream 250421 20304705 ~ 20311890 (+)
LOC111192627 NA coding upstream 321898 20230737 ~ 20240413 (+)
LOC103036204 LOC103036204,LOC108430499,LOC107579660 coding upstream 408454 20146066 ~ 20153857 (+)
LOC103042909 LOC108430590,LOC107582782,LOC108274192,LOC107673648,LOC107698827,LOC107550046 coding downstream 48730 20611971 ~ 20630285 (+)
calm2 calm1,LOC107396020,LOC107670363,LOC105896953,LOC102778633,LOC102293206 coding downstream 118565 20681806 ~ 20690420 (+)
LOC103041876 NA coding downstream 205164 20768405 ~ 20774298 (+)
msh2 msh2,LOC107728724,LOC107698830,LOC107582784,LOC107749362,LOC107550043,LOC107673650 coding downstream 212353 20775594 ~ 20791183 (+)
LOC103026529 foxn2 coding downstream 269508 20832749 ~ 20870619 (+)
G53431 NA non-coding upstream 202151 20341999 ~ 20360160 (+)
G53437 LOC107749351,LOC108273982 non-coding upstream 216248 20345482 ~ 20346063 (+)
G53433 NA non-coding upstream 223805 20337834 ~ 20338506 (+)
G53422 NA non-coding upstream 247662 20314293 ~ 20314649 (+)
G53421 NA non-coding upstream 248270 20313131 ~ 20314041 (+)
G53572 NA non-coding downstream 192481 20755722 ~ 20755941 (+)
G53586 NA non-coding downstream 277626 20840867 ~ 20841695 (+)
G53578 NA non-coding downstream 306048 20869289 ~ 20875453 (+)
LOC111192628 NA non-coding downstream 320040 20883281 ~ 20888071 (+)
LOC111192629 NA non-coding downstream 384400 20947641 ~ 20973710 (+)
cript cript,LOC107582781,LOC107728714 other upstream 1363 20555314 ~ 20560948 (+)
LOC103044634 LOC108429329,LOC104923123,LOC108273985 other upstream 98426 20344023 ~ 20463885 (+)
G53426 NA other upstream 273302 20243150 ~ 20289009 (+)
LOC103024302 NA other upstream 1040525 19516426 ~ 19521786 (+)
G52717 NA other upstream 3513993 17032972 ~ 17048318 (+)
fbxo11 fbxo11,fbxo11b,LOC108430631,LOC105896971,LOC107728720,LOC107582786,LOC107550041 other downstream 230784 20794025 ~ 20825674 (+)
LOC103028037 LOC108429162,LOC107684133,LOC108273534,LOC108430697,LOC108274369 other downstream 1110333 21673574 ~ 21747080 (+)
G53804 ddit4 other downstream 1355984 21919225 ~ 21921594 (+)
epc1 epc1,LOC108430856 other downstream 3690946 24254187 ~ 24290765 (+)
map3k8 map3k8,LOC107686375,LOC107584407,LOC107738976,LOC107665890 other downstream 4529321 25092562 ~ 25108871 (+)

Expression


Co-expression Network