G53556


Basic Information

Item Value
gene id G53556
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20636306 ~ 20637291 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72209
ATACAGCATTAAAGTGACAGAGTTGTAACCATTGTGATGTTCACGATCCATTGcagcttatttttttgtatttttattttttcctaatgTAAATACACAGAATTCAAACAAAAAGTCAGTCAGACAACCAGGAAAATCGttttaattcactttttttctgCCTAAGCTTGCTATACTCGACCCTATGCTATGTGTACAGAATTCATGCCAGAGAACATTGAACGGGAAACAAATAAACgatcaatcaaacaaacaaagaaacaaacagtcTCTCCTATGGTAAAAGTGTGTGCAACCTTCCTCATGAAATGGCTTGTAAGAATTTCCCTTAcattgtgattaactgcaatggCGACAATGAGCGTATTGTCATATCAAagcatattataataatataataatcctttaataaaacaaaactaaaaattccTGCTAGGGTTACCCACGTGCTTGCTgaccaggagaaaaaaaatcattttacataCGATTCAGAATCAAAATCAGCATCAACATCAGCATGAACATTAGGCTCACTGTAGGTCACTTGAGCTGTGTTCACACACAGCAGCCGAAAGTCTCCCTAATCTAATCTGATTGTATGCATCATAAGTGACACAGATGTGAACAAGAACACACTGAATCTGACTTTTTCTACTCTGATTTGGACTTTATCATACGTCACATTGTCACATCTGTTGGCCAGATTAAATCTTAAATCTGACCAAGATGTGGTACTGACAtctgatacatatatatatatatcatacatCATAACCTCCCAGccctttaaatatacagctctgttaaaaaaaaaaaaaacatggaaacaaataaaaataaataagagaccacttaaaatgtatgagtttctttgattttaaaaaataaagaagatggacgatcataagccatcaaaccaaactgaactgcttgaatttttgcaccagcagtaaaggcgtaaag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72209 True 963 lncRNA 0.34 2 20636306 20637291

Neighbor

gene id symbol gene type direction distance location
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 55702 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 68111 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 79976 20541864 ~ 20556330 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding downstream 244100 20316016 ~ 20392206 (-)
trnai-uau_7 NA coding downstream 333678 20302535 ~ 20302628 (-)
LOC103027095 LOC108274166 coding upstream 347168 20984459 ~ 21384885 (-)
LOC103044518 LOC108430683 coding upstream 1018326 21655617 ~ 21669948 (-)
LOC103047279 NA coding upstream 1193548 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 1236198 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 1282238 21919529 ~ 21921617 (-)
G53559 NA non-coding downstream 28714 20606777 ~ 20607592 (-)
G53554 NA non-coding downstream 86105 20543604 ~ 20550201 (-)
G53499 NA non-coding downstream 283455 20342395 ~ 20352851 (-)
G53500 NA non-coding downstream 320723 20314294 ~ 20315583 (-)
G53502 NA non-coding downstream 322260 20313128 ~ 20314046 (-)
G53573 NA non-coding upstream 118342 20755633 ~ 20755885 (-)
G53599 NA non-coding upstream 153917 20791208 ~ 20791497 (-)
G53610 NA non-coding upstream 185608 20822899 ~ 20825641 (-)
G53709 NA non-coding upstream 560222 21197513 ~ 21198057 (-)
G53716 NA non-coding upstream 661169 21298460 ~ 21300545 (-)
G53382 NA other downstream 785956 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 1065928 19522702 ~ 19570378 (-)
G53164 NA other downstream 1969019 18586401 ~ 18667287 (-)
G52652 NA other downstream 4046523 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 4208693 16406719 ~ 16427613 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 146447 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 180548 20817839 ~ 20819409 (-)
G53996 NA other upstream 2454015 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 3704109 24341400 ~ 24351936 (-)
svil NA other upstream 4148960 24786251 ~ 24920590 (-)

Expression


Co-expression Network