G53562 (LOC107396020,LOC107670363,LOC105896953,LOC102778633)



Basic Information


Item Value
gene id G53562
gene name LOC107396020,LOC107670363,LOC105896953,LOC102778633
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20621569 ~ 20690422 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>TU72221
TATTTGGGAtaaattgttaattttattGGAAAACAAATATACAACTTGGAATGGATTCTTTGAGGCATGGTAGTGCcataagcagttaaaaaaagaaaaagaagaagaagtgacTAATTATAAAGCATAGTAATAACCTGGAGaacagaacaaatacaaaaaaagactaTATAGTGTACGAGTACCTGCCGATAAACCCGTTATTTCATTCACTGATGTTGCAATTAGTGCAATGTTGAggataattattttttccacaCATATATACTTAGTCCGTTGCCCATGCAGAGTAGCTCCTCCACAgaaatcaaaacaaacaaaaaatgggggaaataaaagaaaaagaaagaagaaaaaaacaaaaccaaaatcaTCATCAGTCAGCTGGACCCTCAAAACCTCCACTCATCAGGtggcaggcaggcagacagcAAAAAAGCCCAAAGAGAAGGAAGTGCCAGCCAGCCAACATGTGTGCCTATACCCTTCACCTGGTCCTGTGACTGGACTGCTTCTTAGATCAAAAAGAAACATTAACAATGCACATGGAGGGGAagatgggagaaaaaaaaattcagacatGCAGTTCCTTTGGACAGCAGGAGAAGATGAGTAGAATTAAAATGAAAGATTTTACAGAAATTACAAAGAAAAGGCAAATATTTTATACAAGAAATTCTGTACAAGGCCTTCACTTCGCTGTCATCATCTGTACAAAttctgtggagagagagagagaggaaaaaaaggacTTAACTCACTAAGTCACTAAGCATTCTTCCACAGATTTCTTTTCTACATCAAAATTAAGAATGAACAATGACtagagctgcacgatattggaaaaaaaagtgacattgtgatattaaaaagaTTTCTTTAATAGATATGTGATTCAACATCAAGCTCAATGTACCAACAATTGGAGTAATCAAATATGACCTGCCTTTAGAatagaatttaaataaataaataaaatggtgctAAATAACTCTCTGGATTAAAGCAACATGATGTGTATGGTTTAATTAGCTCTAGATCTGTTCTGGATTCTTTATTCCCGTCAATCatttacagggttcatacacgttttaaccaatacatttccatgattttttttcatgacttttctatgccttcaaggcaaattttcatgaccatacgatttttaaaacatcagtgcagacatggacaataaaaaaaaaacaaaagtaaactaaaactataaattaaatttactatagtaggtctaaacaaatctaataaaaaacgTTGACACacaagctttaaaaataaaatgtgcgtCAGTTTCTAAGAGCTCCATTGTGTTGATgcatttgttagctcaaaattttctccatcgataaactgaaacacaaagatttgtgtttttatttttccaaaacttatccaggcctggaaattgccattttcaaatttcatgacttttccacgTTTTTCATGACCAAACAAGCCCTGATTTACTAAATATGTCCATGTTTACGTCATTGCAAGGGCCCTACACTGCATGTATTGCAAAGTGACTATTGGTCTATCTTGTGCACATCACAGTAACAAAGCTCTAATCTGTGCATAATGCAGCCCTAACAGTGACCCAGTCCACCTACCTTCATAATTGACCTGGCCATCACCATCAATATCTGCTTCTCTGATCATTTCGTCTACTTCCTCGTCCGTTAACTTCTCCCCCAGGTTTGTCATTACGTGACGCAGCTCAGCAGCACTGATGTATCCGTTTCCATcctggaaaaaacaaacaaaaaaaacatataggtCATTAAGCAACGGGGCCGCTATGAGGACGGACGGACACTGAGAAACACAGATAAGCCTGTAGAGATCATACACACCTTGTCAAAGACACGGAAAGCTTCCCTGATCTCTTCCTCACTGTCTGTGTCTTTCATCTTCCTCGCCATCATGGTCAAGAACTCTGGAAAGTCTATTGTTCCGTTACCATCTGCATCTACTTCATTGATCATGTCCTgtagctctgcctctgttgggTTCTGGCCAAGGGAGCGCATCACTGTACCAAGCTCTTTGGTGGTTATAGTACCATCTCCATCTTTGTCGAATAGCGAGAAAGCCTCTTTGAACTCAGCAATCTGCTCTTCTGTAAGTTGATCAGCCATTTTGCTGTATTTGTGTGTCTTCCTCCCACAAGCCGCTTCTCAAATGGAGAACTGAAATTTCACTACAGC
>TU72223
TATTTGGGAtaaattgttaattttattGGAAAACAAATATACAACTTGGAATGGATTCTTTGAGGCATGGTAGTGCcataagcagttaaaaaaagaaaaagaagaagaagtgacTAATTATAAAGCATAGTAATAACCTGGAGaacagaacaaatacaaaaaaagactaTATAGTGTACGAGTACCTGCCGATAAACCCGTTATTTCATTCACTGATGTTGCAATTAGTGCAATGTTGAggatatatatttttttttt

Function


NR:

description
PREDICTED: calmodulin-like

GO: NA

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
TU72221 True 2225 TUCP 0.37 4 20681811 20690422
TU72223 False 258 lncRNA 0.30 2 20621569 20690422

Neighbor


gene id symbol gene type direction distance location
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 40965 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 53374 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 65239 20541864 ~ 20556330 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding downstream 229363 20316016 ~ 20392206 (-)
trnai-uau_7 NA coding downstream 318941 20302535 ~ 20302628 (-)
LOC103027095 LOC108274166 coding upstream 294037 20984459 ~ 21384885 (-)
LOC103044518 LOC108430683 coding upstream 965195 21655617 ~ 21669948 (-)
LOC103047279 NA coding upstream 1140417 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 1183067 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 1229107 21919529 ~ 21921617 (-)
G53559 NA non-coding downstream 13977 20606777 ~ 20607592 (-)
G53554 NA non-coding downstream 71368 20543604 ~ 20550201 (-)
G53499 NA non-coding downstream 268718 20342395 ~ 20352851 (-)
G53500 NA non-coding downstream 305986 20314294 ~ 20315583 (-)
G53502 NA non-coding downstream 307523 20313128 ~ 20314046 (-)
G53573 NA non-coding upstream 65211 20755633 ~ 20755885 (-)
G53599 NA non-coding upstream 100786 20791208 ~ 20791497 (-)
G53610 NA non-coding upstream 132477 20822899 ~ 20825641 (-)
G53709 NA non-coding upstream 507091 21197513 ~ 21198057 (-)
G53716 NA non-coding upstream 608038 21298460 ~ 21300545 (-)
G53382 NA other downstream 771219 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 1051191 19522702 ~ 19570378 (-)
G53164 NA other downstream 1954282 18586401 ~ 18667287 (-)
G52652 NA other downstream 4031786 16588150 ~ 16589783 (-)
zcchc4 NA other downstream 4193956 16406719 ~ 16427613 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other upstream 93316 20783738 ~ 20787618 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 127417 20817839 ~ 20819409 (-)
G53996 NA other upstream 2400884 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 3650978 24341400 ~ 24351936 (-)
svil NA other upstream 4095829 24786251 ~ 24920590 (-)

Expression



Co-expression Network


Homologous


species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) G265564 NA non-coding CI01000063 null 5109364 ~ 5113104 (-)