G53598 (msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830)


Basic Information

Item Value
gene id G53598
gene name msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20783738 ~ 20787618 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72268
CGTAAGATCGCAGCAGTCTCCAGCATTTCTGCCATAAAGGTGGAGACCCCTTTGATCTGGCTGTCCCCCGCACCCACCCGGGCCAGCACACAGTCCACCACGCTCAGCTCGGCCTCGTCACATGGTACGAAGCAGCCAATCTGAGCCATGAGCACGATCACGCCCACCTGACGGATGTACGTAGATTTACCACCCATATTTGGAcCTGTAATAATGTGGAACATCTGCTCTCCTCTAGTGAAGGTTACATCATTGGGGATGAAGGCCACATCATCCTGAGCCTCTACACAAGGATGTCGAGATCCCTTCAGGATCAGCCTGCCGCTGCCTTTCTCCAGGATCCTGGGTCTCACAAAGGGAACAGGGGCAGCGTGGGACACCACAGCAAAGCTGACCACCGCATCCAGCTGGGCAATCACCTCGTTCAGGGTCTGCAGCGGCTCCACGTAGCCTCCAGCAATGCCGATTATCTCTTTAACGATGGCATTCTGAGCCTCCTCATACTCCTCCCTGCTTTTAACGTACTCCTCATTCAAAGAGCTCAGCTTAcTGTTAGTAAACCGCACTCCGTTCTTCTGCACATCCAGTGTTGTGAACTTCTTATTGTTGCGCAGAGACTTCTCCTCTTTACAAGTGACCCGGAAGAAATAACCCATCTGTGCATTGGATTCCAGCTTTATTGTTTTGCCTGCATCCAGACCAAGCTCACGAGCTGCACTGTTGAGAGCAGACTGCATGCTTTTCTCCAGCTGGTCCATGCTCTCCCTCAGTTCACTCAGTGTGGGGTCAAACGAGGGTTTCACCAGGAATTCATGGTGATCAATCTGGTTCATGTCCAGCGTGGTTTCAATCATCTCCTGAAACTTGG

Function

symbol description
msh2 Enables guanine/thymine mispair binding activity. Acts upstream of or within maintenance of DNA repeat elements. Predicted to be located in nucleus. Predicted to be part of MutSalpha complex and MutSbeta complex. Is expressed in alar plate midbrain region; immature eye; nervous system; and pharyngeal arch 3-7 skeleton. Human ortholog(s) of this gene implicated in several diseases, including Lynch syndrome (multiple); gastrointestinal system cancer (multiple); lung cancer (multiple); mismatch repair cancer syndrome; and transitional cell carcinoma. Orthologous to human MSH2 (mutS homolog 2).

NR:

description
PREDICTED: DNA mismatch repair protein Msh2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72268 True 868 TUCP 0.52 6 20783738 20787618

Neighbor

gene id symbol gene type direction distance location
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 203134 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 215543 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 227408 20541864 ~ 20556330 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding downstream 391532 20316016 ~ 20392206 (-)
trnai-uau_7 NA coding downstream 481110 20302535 ~ 20302628 (-)
LOC103027095 LOC108274166 coding upstream 196841 20984459 ~ 21384885 (-)
LOC103044518 LOC108430683 coding upstream 867999 21655617 ~ 21669948 (-)
LOC103047279 NA coding upstream 1043221 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 1085871 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 1131911 21919529 ~ 21921617 (-)
G53573 NA non-coding downstream 27853 20755633 ~ 20755885 (-)
G53563 NA non-coding downstream 137229 20620723 ~ 20646509 (-)
G53556 NA non-coding downstream 146447 20636306 ~ 20637291 (-)
G53559 NA non-coding downstream 176146 20606777 ~ 20607592 (-)
G53554 NA non-coding downstream 233537 20543604 ~ 20550201 (-)
G53599 NA non-coding upstream 3590 20791208 ~ 20791497 (-)
G53610 NA non-coding upstream 35281 20822899 ~ 20825641 (-)
G53709 NA non-coding upstream 409895 21197513 ~ 21198057 (-)
G53716 NA non-coding upstream 510842 21298460 ~ 21300545 (-)
G53717 NA non-coding upstream 511213 21298831 ~ 21299286 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 93316 20621569 ~ 20690422 (-)
G53382 NA other downstream 933388 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 1213360 19522702 ~ 19570378 (-)
G53164 NA other downstream 2116451 18586401 ~ 18667287 (-)
G52652 NA other downstream 4193955 16588150 ~ 16589783 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other upstream 30221 20817839 ~ 20819409 (-)
G53996 NA other upstream 2303688 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 3553782 24341400 ~ 24351936 (-)
svil NA other upstream 3998633 24786251 ~ 24920590 (-)
jcad NA other upstream 4162994 24950612 ~ 24998120 (-)

Expression


Co-expression Network