G53610


Basic Information

Item Value
gene id G53610
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 20822899 ~ 20825641 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72281
ccagtttcctttttcctttttttctaggAAATTAAACCCTTTTTAAATTCATACTAGCATCTACATAATGGTTATTGAATACTTCACAATATATTAAGTCTAGATGTTATGGTACATGCATACAATTCAGGCGGCATGAGAAGCCACAGTCACCACATTACACATAGATGGGGATGAATCTGAGGGGCAAAAGACAACAAGGCTGTAGAGATATGTGTCTCAGCTAAGAGGCCGGGGCCTTTATAACAGAGCAAACTCCAGCGATGCTTTTCAATTCTGTGTGTAGCACTTAAACACAGGCACGTGAAGGGCCTCggacccaaacaaacaaaaaacaaacaaaaaaaactactaaaaatatactaaaatataaagAGGGGGACATTTTAATCAATGTCatgttaataataaaactacaaaataaaaataatatgtatttaaactaatttaaagagTGAAGAAAGACTTCACCCTGATAATATTCTTCCACATGAACATTAGAACAGGAACATTGCCTTTCTTTGTggattttaattctgtttagaaatcagtcttttttttttttttcgacttTCAAAAAGGCATCgtctcaaaaaacaaaactaggCAGTGAATAAAGACCCAAACACTgaactgtggaactggaatACAAATAGACTAGAACTGTCACattcacatttataaaatagaaataaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaaatcccgcACAAACAACCGCTTCATACCTCGCATATCGAAAACCATAGCTGGAGGACATATTTTAGTGTTACGTGTTTTCCAAatctcattttgtttttctcgtTAATCCTCTTTCACAGAAAGAATTTATATGCTGAGACACAGTATGATTACAAGCCTAACGTGCGCtaatgaaaatattaataacaataataataataattataatatataataaaataaaagacattCAAATacagtaagatttttttttgcttgaaaatacaaaactacaTGAGAAAGcattaaaatcatatttgttGATCAGAATAAcattaacatattaaaaaaaagcaagtgctaaccacattttttttttagctttcttttttttataccatACATATAATCAGCACATCTGTTACCTAGAAACAGTTGCCAAAGaaagccatgtttttttttttttttttttttttaaatcatggcTCTCCCTCCTATATCCAGGTTCAGGAAGCTGCCCTGGGGGAGGGGTTAATGGCTCCAAGTGTTTCTGGCCACTGTTACACGTCTGTACAAAACTGCAGTAGAACTTCTCCGCTTGAACCTGCACACATCACAGAGACTGCACAGGGTTATCGGTTTGGAAAGACCTAGGACGTTCTCCATCGTTCCTCTTCCAAAACTGGACGCCGCTGTAGTCTCGTCTCTTAATCTCCAGAATCCTGAGTCAACATATTGCTTCTCTGTGCAACTCTCAACTCTTCCAAAGCTCTACCCAAACATTAACCATTCTTTGTGGGTCAAGAGCCGTTTTTGCACTGAACTGAAAAggggaataataataataataataattataataaaaaaactgaacaggGAATCTCTTGCTTCCATTTGCATCAGAACACTTTTCATTTAGAGCAACACACAGACAACAGATCTCTATCCAGCAAAGAGGCAGCTTTCCAAAGGAGGTCCACAAATCTCCTCAAAATGGTTTTTCCTTCCCACAGAACAATTGAAGTGAAAGATTTCGCGGTCCTGTCTCTTTACACAGAGTCTTTCCCAGCCCAAAGTGGCAGAAGCTCTCGTTTTGTAGGCAGGTTCGATTAAAGACCAGGGTGCTGAGATGGAGGAGGGCAGGCTGGGCCTCAGTTGTGTTGTAACGTGTTTGACTCTATAGGAGGCGCCGAGTCGTACAGAGTGTCCGTGTCGTGCGTCGGCTCTCCAGCTAACGTGCAAGGGTTCGACAAAGTACCCGCGCCGCAGTCACAGAAAACCTATCATGCCGTATAAACTCGACATCATGCCCTTGGTGGCATTTCTTGATACAGTTCACACAGATTGCATTTCTGTCTGTTGTATTACAGGTGTGGCACCTGAATGAAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72281 True 2094 lncRNA 0.37 2 20822899 20825641

Neighbor

gene id symbol gene type direction distance location
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 242295 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 254704 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 266569 20541864 ~ 20556330 (-)
LOC103047709 LOC108430512,LOC108273982,LOC107582777,LOC107698822 coding downstream 430693 20316016 ~ 20392206 (-)
trnai-uau_7 NA coding downstream 520271 20302535 ~ 20302628 (-)
LOC103027095 LOC108274166 coding upstream 158818 20984459 ~ 21384885 (-)
LOC103044518 LOC108430683 coding upstream 829976 21655617 ~ 21669948 (-)
LOC103047279 NA coding upstream 1005198 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 1047848 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 1093888 21919529 ~ 21921617 (-)
G53599 NA non-coding downstream 31402 20791208 ~ 20791497 (-)
G53573 NA non-coding downstream 67014 20755633 ~ 20755885 (-)
G53563 NA non-coding downstream 176390 20620723 ~ 20646509 (-)
G53556 NA non-coding downstream 185608 20636306 ~ 20637291 (-)
G53559 NA non-coding downstream 215307 20606777 ~ 20607592 (-)
G53709 NA non-coding upstream 371872 21197513 ~ 21198057 (-)
G53716 NA non-coding upstream 472819 21298460 ~ 21300545 (-)
G53717 NA non-coding upstream 473190 21298831 ~ 21299286 (-)
G53725 NA non-coding upstream 507420 21333061 ~ 21333780 (-)
G53733 NA non-coding upstream 604134 21429775 ~ 21430104 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 3490 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 35281 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 132477 20621569 ~ 20690422 (-)
G53382 NA other downstream 972549 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 1252521 19522702 ~ 19570378 (-)
G53996 NA other upstream 2265665 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 3515759 24341400 ~ 24351936 (-)
svil NA other upstream 3960610 24786251 ~ 24920590 (-)
jcad NA other upstream 4124971 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 4723709 25549350 ~ 25562139 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
striped catfish (Pangasianodon hypophthalmus) G198008 NA non-coding NC_047606.1 CM018552.1 17346016 ~ 17348598 (+)