G53838


Basic Information

Item Value
gene id G53838
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21739449 ~ 21744033 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72584
AAGAAACTGAACGAGTTTGAAACTTATTGATATGTAAAAATCcttgaaataaatattacatagtGGGTTGCTGAGTCAAGCCCAGAGCAATGTGCTGAAGTGCAGCCAACTCTGCCACCCTCTGCTGAGCTGCGGAACTGTTGCTAGGCAGGAGCTTTCCATCCAGATAGTCAGCCAGAGCCTGAAGGACATACACAAGCTCAGAGTCCATTCTGACTGTACACTGAGAAGAATTAGAGTTTGGTGAAGAtggactaaaaaatattttagggtgttttcacacttgaaAGTCTAGGCCAGAGTTCAAACCGaggtttatgtgtttgttaaattatatatttgacATGAGCCaagatgctctttgctatcttacacccagtcaaCACTCGATTTTCACACTTTGTGCCTGCATTGTTAAAATatcatcagagtttaggaataaatctacactgatgggtgtggtggtctggaagtgagtggtggtggtgataaaaaacacaggagctccactgactgaaataaatttAGACAACAGTCAGTCGTCAGAGTTCATTCCTACAGGgcgcaaacctgacttttaactcagaataatacacagaataacaaataaaataacattactgttcccttaaatgagctgctggtgtatcttcacagcgtgaacgtgcaggtcagtattcctctgctgagacgcacaaagtgCCGCACTGTTTAGATATGAACGTGCCTAAATCAGAGTGCACCtgccttttaaagggaatggtaaGTGATgcactgattggttcatttcacgttacacccaaaacacacccataattaattaagagaattagtacatgacttttgcatgttttgagctgtgcaagacATATTTTTGGTGCCcttacaataccaaagacacactgacacgccctaaatccagctgtgcaatCTGCAAGTGACTGGTACGCTATAGATTGCTGAAATAGGGGCCGTAATCTGGTTAGATTTGGTTTaaaactgcagtttagtgagcttTAAAAATCTACCTATGTCCTGTCAGCATCATCTGCATGAGTTGCATCTCCTTATAGTTTACACTAAAAGCCTTTTTCCACCAATCTGATCTAGTTCATGCACCTAAGTTTAAACTATTTGGcgcatttccaccaacaaaaataGGTTCTGGAACCTTAAAAATTAAATTCCAGCTGGAACCAAAAATAAAGGGTTCTTCAGCATAAACCAATGGCCTCAAACACAGTCTGTTTAATACATGCCTGAACAAATCCAGTTCAAGAACCAAAGTTATTTTGGTCAAAAAGCTCTGTTATTGGTTTGCAAAAAGTTGTCAATTCAGAGTGTTGCAGTTAGCATGCATGTGGGTTCATGCAGTGTAACAGAAAACCCTCagattacttttatttctacttGAAAATaggggttaatctacagttacaggaGGTACAGTACATATATGGACTTGCACCTATACAGCTGTGTGACGTGTGTGTTTGCAATTACACAAGGATCATCGGATTTTGCGACAACATCtgtcctttttcttcttctattgtttaatgggtgatgatagtctgcctcaacttcctgtaatagGTCCAAAAACCTGAACCATCTAGGAAAGAGTTTTCACTCTGCAAAAAAACTGCACCATGgtatgggcaaaaaaaaatcctgttaatATTTTGCACCATGGTCTTGGAATAAACTTCAAAGCAAATTACAGCTTAATGAGTTGGTttccttaaagcagcactaggtaggatttccttgatttttgatctttttaaagaagtaaaattacagcttgaaactcactgcagcgctgcattgaggtgtaataggaggaatagcggtgctctcgtgtctgtgccggagctcctctgagcttaaaccagactctgtaagtttttcgaggcggccgcgaccaacgctcgcgagaactgcgacctgctttccgacctttagttctaacagttctacatgGACTATTGGTTCaatctttacaaactaacatacagacactctggcagaagctggaaagagaccgaatatgtctgtgaaagacagaaaatgagaaagagaaactaatccgcctgaaacatttactacactctacaactgtaggggaagctcacaagcacaaaatctcaatcctacctagtggagctttaagtgaGATTAAAACCTTGGTAAAGAGTTCTCTGATGGAAACATGCAAATGCTACTCGTAAATTTATTCTCCCtctgttttgttcttttatgttgatttatgtttattttaattgcgTTTGTGTAAACACTTTGTTGTAATTCTCTGTGACTGGACATGGTGTGCCGTCTTGGCCAGATCTCCCTcgaaaaaaagagattttgatCTCAATGGAAtttcctggttaaataaagggttaaataaataagGAGCTGGGCCACGGCCATCTCCTTTTTAATAGTTGGACCAAGTTTTGGATCTTTGGTCTGAACCGGACCaaacaaggtacagtaggtgtgaTAGAAGGTCTAAAATGCTACAAAaacacattctttaaaaaaacagcaaacagtaCCAGCTGGTAATGAAACTCCACATAGAGGTCATTGTCAAAGTGCAGGGGGTGCTGCCAGACGAGTCGATGGAAAGAGAGGATGATTGAGCCATCGTCAAGCAGGAAGTCAAACAGATACTCATTAGGGTGGATGGGACGCACTTCTCCAC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72584 True 2716 lncRNA 0.40 2 21739449 21744033

Neighbor

gene id symbol gene type direction distance location
LOC103044518 LOC108430683 coding downstream 69501 21655617 ~ 21669948 (-)
LOC103027095 LOC108274166 coding downstream 354564 20984459 ~ 21384885 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 1158845 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 1171254 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 1183119 20541864 ~ 20556330 (-)
LOC103047279 NA coding upstream 86806 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 129456 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 175496 21919529 ~ 21921617 (-)
anapc16 anapc16,cj104 coding upstream 189236 21933269 ~ 21938448 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 302463 22046496 ~ 22054088 (-)
G53757 NA non-coding downstream 85754 21653436 ~ 21653695 (-)
G53754 NA non-coding downstream 97921 21640367 ~ 21641528 (-)
G53751 NA non-coding downstream 102283 21634761 ~ 21637166 (-)
G53752 NA non-coding downstream 102628 21636445 ~ 21636821 (-)
G53747 NA non-coding downstream 131703 21607244 ~ 21607746 (-)
G53850 tdrkh non-coding upstream 48535 21792568 ~ 21798437 (-)
G53851 tdrkh,LOC107702489 non-coding upstream 54426 21798459 ~ 21808456 (-)
G53858 NA non-coding upstream 142521 21886554 ~ 21888629 (-)
G53861 dnajb12 non-coding upstream 149393 21893426 ~ 21897580 (-)
G53856 NA non-coding upstream 163652 21907685 ~ 21916759 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 920040 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 951831 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1049027 20621569 ~ 20690422 (-)
G53382 NA other downstream 1889099 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2169071 19522702 ~ 19570378 (-)
G53996 NA other upstream 1347273 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2597367 24341400 ~ 24351936 (-)
svil NA other upstream 3042218 24786251 ~ 24920590 (-)
jcad NA other upstream 3206579 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3805317 25549350 ~ 25562139 (-)

Expression


Co-expression Network