G53850 (tdrkh)


Basic Information

Item Value
gene id G53850
gene name tdrkh
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21792568 ~ 21798437 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72599
TCCGCATCTGATTTAAAGGAGTTTTCAGCAGTTTGGTCACCACTGCTGGGAAACCCATTGGAGACACTGGTCTGAAGAAATCTGGAGTCAGTAGCTGGGGACAGCAGGTCCTCGCTGTTGATGGTCTGAGTAAGGTCTGTGTCTGGGCCCTGAAGCTTGTGGATGAGCTCCAGTTCTGGGGGTTTCCTTTTCTGGCGTAGAGCTGAAGACTGGCTTATCCGCTTTCGTACCGTCTCGTTCTCCTGCACCTTCTCCATGATCAAATcTTTGGCACGGCGTACTTCTTGACGCGTTCCCGAAATTGTGACCTTGCCCTTCTCTTCCATGCTTTGGCCACGATCCCGTTGACAATTTACCCGAGCTCCAGATGTTCGACTAATTAATTTCAGGGTTTCACCACCACGACCTATGATCCTCCCAAACGCCGTCTGTGGCACCTCGATCACATCACTGATCACCTCACAGTCGGTAGCAAGTTTTTCCAGAGTACACTTCGCCAGGAGGATCTGCTCAGCTGTGCCCTGGAGCAGGAAGCAGACGGAGCTCGGCTTCTCCAAATCAGACAGTACATTTACCTGAGCACCAGACTGCTGATTCACCAGATCCAGAAATGTGCTCTGGTGTCTTGAAATAGATCTGTATACATCAAGGGGCACTGAAAGCCTGGACTCCTCTGTTTTGTGGCACTctgCACTGCAGCTCCTAATGTGCCTGTAAACTATGTAGCCCACTGTGGCTCCCACAGAAAGGCCTGCAGCCAGGGCCACCTTCTTTGCTGAGCTCAGGCCTTTCCACGGACCATCCCGTACTGCTGACATCAGCTGCGCTGAGCCGAGGGCCTGACCCCACCTCCTAAACCCGGCTGAAGAAAGACGCTGCTGGGCGAGTCCTCCCCTCCGATCTTCAGCAAACACCACCAACACGGTTCACCATCCAACCAGCAGCGAATCAGACCAGCGTGTCTGTTACCCGCTATCTATCAGTGCACTGGCGGTGTCCAACTGAGC

Function

symbol description
tdrkh Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TDRKH (tudor and KH domain containing).

NR:

description
PREDICTED: tudor and KH domain-containing protein isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72599 True 1007 lncRNA 0.53 6 21792568 21798437

Neighbor

gene id symbol gene type direction distance location
LOC103044518 LOC108430683 coding downstream 122620 21655617 ~ 21669948 (-)
LOC103027095 LOC108274166 coding downstream 407683 20984459 ~ 21384885 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 1211964 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 1224373 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 1236238 20541864 ~ 20556330 (-)
LOC103047279 NA coding upstream 32402 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 75052 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 121092 21919529 ~ 21921617 (-)
anapc16 anapc16,cj104 coding upstream 134832 21933269 ~ 21938448 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 248059 22046496 ~ 22054088 (-)
G53838 NA non-coding downstream 48535 21739449 ~ 21744033 (-)
G53757 NA non-coding downstream 138873 21653436 ~ 21653695 (-)
G53754 NA non-coding downstream 151040 21640367 ~ 21641528 (-)
G53751 NA non-coding downstream 155402 21634761 ~ 21637166 (-)
G53752 NA non-coding downstream 155747 21636445 ~ 21636821 (-)
G53851 tdrkh,LOC107702489 non-coding upstream 22 21798459 ~ 21808456 (-)
G53858 NA non-coding upstream 88117 21886554 ~ 21888629 (-)
G53861 dnajb12 non-coding upstream 94989 21893426 ~ 21897580 (-)
G53856 NA non-coding upstream 109248 21907685 ~ 21916759 (-)
G53868 ascc1 non-coding upstream 142165 21940602 ~ 21941350 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 973159 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1004950 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1102146 20621569 ~ 20690422 (-)
G53382 NA other downstream 1942218 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2222190 19522702 ~ 19570378 (-)
G53996 NA other upstream 1292869 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2542963 24341400 ~ 24351936 (-)
svil NA other upstream 2987814 24786251 ~ 24920590 (-)
jcad NA other upstream 3152175 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3750913 25549350 ~ 25562139 (-)

Expression


Co-expression Network