G53851 (tdrkh,LOC107702489)


Basic Information

Item Value
gene id G53851
gene name tdrkh,LOC107702489
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21798459 ~ 21808456 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72602
GTACATCTCTTAAtgaacacaaacaaactgtGAAATGCACAACATAAATAACAGTGTTACAGTAAAAGTTCAGACAGTACCAAACAAAAACCCAAAATCTAAGTGCAAACTATGGAAATACTGAGGTTTCTTCCTGTCGAGTACACATTCCACATTCCCTGAGCTCTGCTCCTCATCTGGACATCAGTTAACTGTTCTCAAGCAGCTCAATGCAAAACAAAGACGGGCTGGGCAAATATTAACTCTTATAGCAGGGGTGCTCATCCCTGCTCCTGGAGATCTACCACTACAGACATTTTAGATTAGGGAGGAGGTAAACTTCATGATGAGAAATCAGCACCCCTGTGTGCATTATAACagacaaaaaagcaaacaaacaaacaacaacatatAGCACAGTCAGAGACTCCCAGCTGCATAGTGGGAAACATTAACTTCATGTCAGCATCATGGTCACAGGTGGTCTCAAAATGAAGGCATACATGTCTTTGGTCTCTTATCAGGCAAATTCTTCTTCGAGGACATCGTCCACACTTCCAGATATTGAAGCAACTtCTTTTATGGGTTGATCTccactttttttccccaatttgcTTTCATCTTCTGTTCTTCTCCTTTCTTCCACTCCAGCTTGTTCACAAATCTCCTTCGTCCCTTCACTCGCGTTTTCAGCATGGCccagttcattttttttatcaactgCCTGAGAATCCTTACTGTTCCCTTCAGCGAAAGCCTTAGATGTTGACTTGTG
>TU72605
GTACATCTCTTAAtgaacacaaacaaactgtGAAATGCACAACATAAATAACAGTGTTACAGTAAAAGTTCAGACAGTACCAAACAAAAACCCAAAATCTAAGTGCAAACTATGGAAATACTGAGGTTTCTTCCTGTCGAGTACACATTCCACATTCCCTGAGCTCTGCTCCTCATCTGGACATCAGTTAACTGTTCTCAAGCAGCTCAATGCAAAACAAAGACGGGCTGGGCAAATATTAACTCTTATAGCAGGGGTGCTCATCCCTGCTCCTGGAGATCTACCACTACAGACATTTTAGATTAGGGAGGAGGTAAACTTCATGATGAGAAATCAGCACCCCTGTGTGCATTATAACagacaaaaaagcaaacaaacaaacaacaacatatAGCACAGTCAGAGACTCCCAGCTGCATAGTGGGAAACATTAACTTCATGTCAGCATCATGGTCACAGGTGGTCTCAAAATGAAGGCATACATGTCTTTGGTCTCTTATCAGGCAAATTCTTCTTCGAGGACATCGTCCACACTTCCAGATATTGAAGCAACTtCTGACAAGCTGATGCAGGACATACTTAATTCTGATGTTGCCCCGGTCATGTCATCCAACATCTTCTGCAGAGATCTGGGCTCATCTCCATCTCTCAGCTCACTGCCCTCATCTTGATGGCTCACTGCATGGCCCAACCTGATCAACTCCTCACCCAGGTCTACAATCTTTCCTTGCCGGTTATCATACAGCTTCACATTGGGCCAGGAGGACATCTCTGAGTGAGAGTAACTGCACAGTTTGGCCAGTAGAGGCTTCCACTGTGCACAGAACGTCATTCGATCAAAATCATCCAGAGCCTCCTCTGTCCAGACCTCTCCTAATGGACACACCCCTGCCAGACTACACTCGATAGCTTGGAAGGGCAAGCTCAGGAAATCACTCCTCATGCTGCATAGCTGATCTCGTGGCAGCTCTCCATTGTCCCCAAAGTCCACGTAGTACAGGTCAACCAGACCAGAGCTTAGAATTCCTAACACTCGTGCCCGGTTCCACGTGCCGTGGTCCCGATAAGGAGCAGCCACAATGTCCCCAACAACTATGGCCTCCACTCTGTGCTCCTGTAAAGTGTCGGCACTGTAGAAACGGCTCATCTCAGCCGTCAGTTTGTCTAGTTGAAGAGATCGAACTCCTACAATCTGGATCCAAAAGTGCTGGGGGTTCTCTGATGCAGACACGTACACTTCTAAATGTTCACCAGGCTGGAAGCTCAGGTCTGGACTGGGAATTTCAAACTTAGAG
>TU72606
CTccactttttttccccaatttgcTTTCATCTTCTGTTCTTCTCCTTTCTTCCACTGCAGCTTGTTCACAAATCTCCTTCGTCCCTTCACTCGCGTTTTCAGCATGGCccagttcattttttttatcaactgCCTGAGAATCCTTACTGTTCCCTTCAGCGAAAGCCTTAGATGTTGACTTGTGTGAGCCAACAAACAGTACATCACTTCCAGTACTGCTGCAAATACTggagtcagacagacagacaacacTGCAATCATACTTCTTCTGAAGCGATTGGTCAGATTCAGTCGCTTCAGGTGCATCTGCCAACAGCATCTCAGCATCGTCGGTAGTCTCTGAGAAGTCCGAGCTGAGACAGACTACAGAGGGGGAGGTCACAGAGGTCGTGTCTTCGCAGTCGGTCGCAGAGGAGGACGAGAAGGATGGATAGGAGGATGACGAACTGGTGATGGACGATGCAGGCATGGTAGTGTTGAGTGAAGAGTCCATAGAAGAACCCTTAGAGGACATGAGGTAGTACCAAACACCTCGTACTCCATCACTAGAgttactagtgctgctgctgctgctgtcgccGCCATCAGTgctgtaacacacactctcactgcaaGTGCTCAGAGAAGACTCCAGGCCCATCGGCTCTGAAGAAGAAGCCGTTACACGTCTGTGGTCACATGTCTCAAGAAACACATCATCACAGAGGGTGACAGAACCTAGTGCTGATGCCACTGCATTTACAGGGGATGAAGAGGAAGCTGTGGATGtggatgctgatgatgatgctgatgagaTGTCTGAGTAGATTAATGGATTCTGAACAGGCTTAGTGCCAGTGCCTGGCGGATCAGGGTCCACTGGACTCAAAGCAGAGCTGGACAGCTCTATGACTTGGCTGACCAGCTCACCCAGGCTCTGAGATGGAGTGGACTGGATAAGGGAGGAGGTAGACGGCACAAATCTGTCAGGAACTGAGGGAATCTGGTCCACATCGGCTCGCTCTACTTCCACAGAGCTCAGGCTGGCTGCAGAAGACCACGTCTGATGCTGTCTCACCCATGTAGGTGTAGAACCTGACAAGCTGATGCAGGACATACTTAATTCTGATGTTGCCCCGGTCATGTCATCCAACATCTTCTGCAGAGATCTGGGCTCATCTCCATCTCTCAGCTCACTGCCCTCATCTTGATGGCTCACTGCATGGCCCAACCTGATCAACTCCTCACCCAGGTCTACAATCTTTCCTTGCCGGTTATCATACAGCTTCACATTGGGCCAGGAGGACATCTCTGAGTGAGAGTAACTGCACAGTTTGGCCAGTAGAGGCTTCCACTGTGCACAGAACGTCATTCGATCAAAATCATCCAGAGCCTCCTCTGTCCAGACCTCTCCTAATGGACACACCCCTGCCAGACTACACTCGATAGCTTGGAAGGGCAAGCTCAGGAAATCACTCCTCATGCTGCATAGCTGATCTCGTGGCAGCTCTCCATTGTCCCCAAAGTCCACGTAGTACAGGTCAACCAGACCAGAGCTTAGAATTCCTAACACTCGTGCCCGGTTCCACGTGCCGTGGTCCCGATAAGGAGCAGCCACAATGTCCCCAACAACTATGGCCTCCACTCTGTGCTCCTGTAAAGTGTCGGCACTGTAGAAACGGCTCATCTCAGCCGTCAGTTTGTCTAGTTGAAGAGATCGAACTCCTACAATCTGGATCCAAAAGTGCTGGGGGTTCTCTGATGCAGACACGTACACTTCTAAATGTTCACCAGGCTGGAAGCTCAGGTCTGGACTGGGAATTTCAAACTTAGAG
>TU72607
CTccactttttttccccaatttgcTTTCATCTTCTGTTCTTCTCCTTTCTTCCACTGCAGCTTGTTCACAAATCTCCTTCGTCCCTTCACTCGCGTTTTCAGCATGGCccagttcattttttttatcaactgCCTGAGAATCCTTACTGTTCCCTTCAGCGAAAGCCTTAGATGTTGACTTGTGTGAGCCAACAAACAGTACATCACTTCCAGTACTGCTGCAAATACTggagtcagacagacagacaacacTGCAATCATACTTCTTCTGAAGCGATTGGTCAGATTCAGTCGCTTCAGGTGCATCTGCCAACAGCATCTCAGCATCGTCGGTAGTCTCTGAGAAGTCCGAGCTGAGACAGACTACAGAGGGGGAGGTCACAGAGGTCGTGTCTTCGCAGTCGGTCGCAGAGGAGGACGAGAAGGATGGATAGGAGGATGACGAACTGGTGATGGACGATGCAGGCATGGTAGTGTTGAGTGAAGAGTCCATAGAAGAACCCTTAGAGGACATGAGGTAGTACCAAACACCTCGTACTCCATCACTAGAgttactagtgctgctgctgctgctgtcgccGCCATCAGTgctgtaacacacactctcactgcaaGTGCTCAGAGAAGACTCCAGGCCCATCGGCTCTGAAGAAGAAGCCGTTACACGTCTGTGGTCACATGTCTCAAGAAACACATCATCACAGAGGGTGACAGAACCTAGTGCTGATGCCACTGCATTTACAGGGGATGAAGAGGAAGCTGTGGATGtggatgctgatgatgatgctgatgagaTGTCTGAGTAGATTAATGGATTCTGAACAGGCTTAGTGCCAGTGCCTGGCGGATCAGGGTCCACTGGACTCAAAGCAGAGCTGGACAGCTCTATGACTTGGCTGACCAGCTCACCCAGGCTCTGAGATGGAGTGGACTGGATAAGGGAGGAGGTAGACGGCACAAATCTGTCAGGAACTGAGGGAATCTGGTCCACATCGGCTCGCTCTACTTCCACAGAGCTCAGGCTGGCTGCAGAAGACCACGTCTGATGCTGTCTCACCCATGTAGGTGTAGAACCTGACAAGCTGATGCAGGACATACTTAATTCTGATGTTGCCCCGGTCATGTCATCCAACATCTTCTGCAGAGATCTGGGCTCATCTCCATCTCTCAGCTCACTGCCCTCATCTTGATGGCTCACTGCATGGCCCAACCTGATCAACTCCTCACCCAGGTCTACAATCTTTCCTTGCCGGTTATCATACAGCTTCACATTGGGCCAGGAGGACATCTCTGAGTGAGAGTAACTGCACAGTTTGGCCAGTAGAGGCTTCCACTGTGCACAGAACGTCATTCGATCAAAATCATCCAGAGCCTCCTCTGTCCAGACCTCTCCTAATGGACACACCCCTGCCAGACTACACTCGATAGCTTGGAAGGGCAAGCTCAGGAAATCACTCCTCATGCTGCATAGCTGATCTCGTGGCAGCTCTCCATTGTCCCCAAAGTCCACGTAGTACAGGTCAACCAGACCAGAGCTTAGAATTCCTAACACTCGTGCCCGGTTCCACGTGCCGTGGTCCCGATAAGGAGCAGCCACAATGTCCCCAACAACTATGGCCTCCACTCTGTGCTCCTGTAAAGTGTCGGCACTGTAGAAACGGCTCATCTCAGCCGTCAGTTTGTCTAGTTGAAGAGATCGAACTCCTACAATCTGGATCCAAAAGTGCTGGGGGTTCTCTGATGCAGACACGTACACTTCTAAATGTTCACCAGGCTGGAAGCTCAGGTCTGGACTGGGAATTTCAAACTTAGAG

Function

symbol description
tdrkh Predicted to enable RNA binding activity. Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human TDRKH (tudor and KH domain containing).

NR:

description
PREDICTED: tumor necrosis factor alpha-induced protein 3

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72602 False 754 lncRNA 0.42 3 21804529 21808456
TU72605 False 1295 lncRNA 0.47 9 21798459 21808456
TU72606 True 1814 lncRNA 0.51 9 21798459 21807133
TU72607 False 1814 lncRNA 0.51 9 21798459 21807133

Neighbor

gene id symbol gene type direction distance location
LOC103044518 LOC108430683 coding downstream 128511 21655617 ~ 21669948 (-)
LOC103027095 LOC108274166 coding downstream 413574 20984459 ~ 21384885 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 1217855 20572412 ~ 20580604 (-)
LOC103047390 NA coding downstream 1230264 20562271 ~ 20568195 (-)
pigf pigf,LOC107698824,LOC107582779,LOC107749355,LOC107550047,LOC107728710,LOC107700117 coding downstream 1242129 20541864 ~ 20556330 (-)
LOC103047279 NA coding upstream 22383 21830839 ~ 21870274 (-)
narf narf,LOC107581643 coding upstream 65033 21873489 ~ 21885441 (-)
ddit4 ddit4 coding upstream 111073 21919529 ~ 21921617 (-)
anapc16 anapc16,cj104 coding upstream 124813 21933269 ~ 21938448 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 238040 22046496 ~ 22054088 (-)
G53850 tdrkh non-coding downstream 22 21792568 ~ 21798437 (-)
G53838 NA non-coding downstream 54426 21739449 ~ 21744033 (-)
G53757 NA non-coding downstream 144764 21653436 ~ 21653695 (-)
G53754 NA non-coding downstream 156931 21640367 ~ 21641528 (-)
G53751 NA non-coding downstream 161293 21634761 ~ 21637166 (-)
G53858 NA non-coding upstream 78098 21886554 ~ 21888629 (-)
G53861 dnajb12 non-coding upstream 84970 21893426 ~ 21897580 (-)
G53856 NA non-coding upstream 99229 21907685 ~ 21916759 (-)
G53868 ascc1 non-coding upstream 132146 21940602 ~ 21941350 (-)
G53918 NA non-coding upstream 348533 22156989 ~ 22158000 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 979050 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1010841 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1108037 20621569 ~ 20690422 (-)
G53382 NA other downstream 1948109 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2228081 19522702 ~ 19570378 (-)
G53996 NA other upstream 1282850 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2532944 24341400 ~ 24351936 (-)
svil NA other upstream 2977795 24786251 ~ 24920590 (-)
jcad NA other upstream 3142156 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3740894 25549350 ~ 25562139 (-)

Expression


Co-expression Network