G53858


Basic Information

Item Value
gene id G53858
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21886554 ~ 21888629 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72620
GTTTTGTAATGCGACGAACAAGCAGCCCGTTACATAGAACAGCTTCCATAATACACTGTCTGAACTGTAATATGCTGCAGCCAGGCCTACTGAGGCAATGCCGACGAGTAGAGACCAGGATCTGATTCCAGGTGATCTCTTAAGACGGAGAACATCTGCAGTGTGCTCCTCAACCACCATATACACCATCTTTAACACTTCTCTAAATCACCTACACCTCTAAATATCAATATCTACTTCTTTTTAGAGTTTAAACTGCTAAAGACAGTCCAGTTCAGGTCCATACATTTCCCCTCACACACGGGTTTTTCCAACTTCCTCCTAAGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72620 True 327 lncRNA 0.44 4 21886554 21888629

Neighbor

gene id symbol gene type direction distance location
narf narf,LOC107581643 coding downstream 1113 21873489 ~ 21885441 (-)
LOC103047279 NA coding downstream 16280 21830839 ~ 21870274 (-)
LOC103044518 LOC108430683 coding downstream 216606 21655617 ~ 21669948 (-)
LOC103027095 LOC108274166 coding downstream 501669 20984459 ~ 21384885 (-)
LOC103043231 gch2,LOC108429343,LOC107550032,LOC105896951,LOC106589406 coding downstream 1305950 20572412 ~ 20580604 (-)
ddit4 ddit4 coding upstream 30900 21919529 ~ 21921617 (-)
anapc16 anapc16,cj104 coding upstream 44640 21933269 ~ 21938448 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 157867 22046496 ~ 22054088 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding upstream 168344 22056973 ~ 22065003 (-)
zeb1 zeb1 coding upstream 2605686 24494315 ~ 24607305 (-)
G53851 tdrkh,LOC107702489 non-coding downstream 78098 21798459 ~ 21808456 (-)
G53850 tdrkh non-coding downstream 88117 21792568 ~ 21798437 (-)
G53838 NA non-coding downstream 142521 21739449 ~ 21744033 (-)
G53757 NA non-coding downstream 232859 21653436 ~ 21653695 (-)
G53754 NA non-coding downstream 245026 21640367 ~ 21641528 (-)
G53861 dnajb12 non-coding upstream 4797 21893426 ~ 21897580 (-)
G53856 NA non-coding upstream 19056 21907685 ~ 21916759 (-)
G53868 ascc1 non-coding upstream 51973 21940602 ~ 21941350 (-)
G53918 NA non-coding upstream 268360 22156989 ~ 22158000 (-)
G53924 NA non-coding upstream 309619 22198248 ~ 22298487 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 1067145 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1098936 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1196132 20621569 ~ 20690422 (-)
G53382 NA other downstream 2036204 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2316176 19522702 ~ 19570378 (-)
G53996 NA other upstream 1202677 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2452771 24341400 ~ 24351936 (-)
svil NA other upstream 2897622 24786251 ~ 24920590 (-)
jcad NA other upstream 3061983 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3660721 25549350 ~ 25562139 (-)

Expression


Co-expression Network