G53868 (ascc1)


Basic Information

Item Value
gene id G53868
gene name ascc1
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 21940602 ~ 21941350 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72638
CTTGTAAAGAACACTTGGAACATCAATGGCACATCGAAATCCCTTTTCTGTCTGTTCAATGTTGTTAGTGTCACAAGGCTCATCCATGCACTGGTCAGTAACTGGTCCAGAGTATGAAAAatcctcttcttcttcatcctcaTAATGCTCCTCTTTAATGAGattttttctgtaaatccttCCATTGATGTTAATCAGTGCTGGCCGCAAAATGTCCATTGTTACCTAGATCTAAAACTGAATAAACACTTAATTTACCAACATTTTAATAGTTATATTCAAGAACCATAAATATACATCCTGGATAGACAATAGACAACACATGACCAATTCCATGTAATTCCACATATCTACACAGCAATTCTGTCTATTAAAAAGTAGGTCTGGACAATATGGTGAAAATGACCA

Function

symbol description
ascc1 Predicted to enable RNA binding activity. Acts upstream of or within several processes, including myotome development; neuromuscular junction development; and thigmotaxis. Predicted to be active in nucleus. Is expressed in cardiac muscle; head; and trunk. Human ortholog(s) of this gene implicated in Barrett's esophagus. Orthologous to human ASCC1 (activating signal cointegrator 1 complex subunit 1).

NR:

description
PREDICTED: activating signal cointegrator 1 complex subunit 1 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72638 True 408 lncRNA 0.36 2 21940602 21941350

Neighbor

gene id symbol gene type direction distance location
anapc16 anapc16,cj104 coding downstream 2154 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 18985 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 55161 21873489 ~ 21885441 (-)
LOC103047279 NA coding downstream 70328 21830839 ~ 21870274 (-)
LOC103044518 LOC108430683 coding downstream 270654 21655617 ~ 21669948 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding upstream 105146 22046496 ~ 22054088 (-)
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding upstream 115623 22056973 ~ 22065003 (-)
zeb1 zeb1 coding upstream 2552965 24494315 ~ 24607305 (-)
mtpap NA coding upstream 3130104 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 3444340 25385690 ~ 25390707 (-)
G53856 NA non-coding downstream 23843 21907685 ~ 21916759 (-)
G53861 dnajb12 non-coding downstream 43022 21893426 ~ 21897580 (-)
G53858 NA non-coding downstream 51973 21886554 ~ 21888629 (-)
G53851 tdrkh,LOC107702489 non-coding downstream 132146 21798459 ~ 21808456 (-)
G53850 tdrkh non-coding downstream 142165 21792568 ~ 21798437 (-)
G53918 NA non-coding upstream 215639 22156989 ~ 22158000 (-)
G53924 NA non-coding upstream 256898 22198248 ~ 22298487 (-)
G53926 NA non-coding upstream 376044 22317394 ~ 22449619 (-)
G53932 NA non-coding upstream 600820 22542170 ~ 22542524 (-)
G53933 NA non-coding upstream 608723 22550073 ~ 22550295 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 1121193 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1152984 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1250180 20621569 ~ 20690422 (-)
G53382 NA other downstream 2090252 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2370224 19522702 ~ 19570378 (-)
G53996 NA other upstream 1149956 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2400050 24341400 ~ 24351936 (-)
svil NA other upstream 2844901 24786251 ~ 24920590 (-)
jcad NA other upstream 3009262 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3608000 25549350 ~ 25562139 (-)

Expression


Co-expression Network