G53924


Basic Information

Item Value
gene id G53924
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 22198248 ~ 22298487 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72715
TGAAAACTGGTAATTACTCCCCTGAGTCTGAGAGATCACTTTGCTCTTTCTCAGTTATCGGGCTGTTGTTTTAGATGTAAGCGCTACTCAGTTTAGGACAGTAATGAGGTTAGTCTGGTTTTACATTTACAAGAATGAGAAATAAGAACTGATGTTACTCAAGACAACCACAGAtttgccaaatgtcatgggacatttGTAGCATATCCCATGCTTTCAGGGCATCCGAAGACTCAATTAATACAAATGTAGATGTTACTCAAAAAAGCTTTTACATAAAAGACAGAAACACTGTTAATATGATGCGGtgtacaaaaaaagacaaagtgcATCTGAaacctgcattaaaaataaatttctcCAGTGTAAAGCTCTAAGGAAATTCATCTTTGCTACAACAGTATGATAAAACACCTCACACACGCAGAGACAGAGCTGCTAAACAAAACGGCATCATATTACCATCATGCGTTCAAGGCCTTGCTCGCGAGTAATCacctttttaataattaaaatggaAACGGAAAGGGAGTCCTCTCACTTCAAAGTCTTCCGCGCTGCCCCAAGGCCATGTTTGGGTTTCTGACAGATCTGGAGTGCTACATGCGTCTGAGCGGAGTGCACGGGAACTACATTCTCAAGCGTTTGTCTCAATCATTTTGGACATTTGAACTTCTCCATAGGAAGGCCACCGGGCAAgttagaaagaaaaagaaaagaaaaaataataaacggAGTCAAAAAAGCTAGACAAGACACTGAACAAGGGAATAGAAGTTCTTAAATGTGAGTTTAAATCTTCTCGCTTTGAGACCCTACTGGTCTGTAGAGAGGTCCATGCCATTATCAGGCCTCAGTCTTTGGAGAGCTGGACGTCGTTGAAGGGCCTGAAACGCTGGTGTGCTGGTGTTCGAGGAGAGGAGTCTGCGGAGCTCCTCTGTTGCAGCAGAGGCAGAGGAAGCTCAGCATGCCTGCGAGGCAGGCCACCGTTGGTAGGGTTGTGTGCTGGTATATCTCAGCAGCTGGGCTGTGGTACTCTGACGAGGCCAAGAAAACACCGTCGAGGCTGAGCGATGCAGCTAGAATGAAGTTCCTCCCTCgttagctctgtgtgtgtgtgcttgcagacaatagttttttttttataaaaaaagaaaaaagacgtCTAGACTTTCTTGATTTGTTGTGTATCTATATACATTAGATCTAACAATAGATCTCCAGACTACAGACACCAAAAGCACCTTTTCGGTgttgatgtgatgtgatgtgttttttagtgtgtgtgtgtgtgtgtgtgtgtgtggctgtgtgtgtaagtattTGAGTGGTTGGGTTGCCTGCTTTGGTTCCATTGCGGTTCCTGATGGCATAAGGTCTTTCCCAtgagttccttttttttttgttttgacttAATTTGTAacaaactcaacacacaccGCATCAGGACAAAAGGACGGTGAAAGATTGAGACACAGGTTTGAACCACTGTTCACCTGTCTACCAAGGCCAGTGAATGACAAATACATGAAGTAGTCCATAGAGTGTGCAACCTTCTGTATGTGAAttccaataataaaataaaatctctctgaaaattaacaaaaaaacaacaaaaaacacacaatgtcCGTAAAAGCTGTAGGTAAGTCAGCTGAGACACACACAATGCCATCATGCTGGCTGTTTCAGAGCCTGTGCCAACTCCAGTGGGCCAACGGGCTCTCGCTGGTGTGCGTATCCTATAGGGGCACACGTTATCTGGAGTGAGGAGAGTGGCACATGAACAGTGGGGGACTGAGAgggagcgaaagagagagagagagagacagggagagcaGAAAGGGCTCACAGCTGGTGCACAATGCTGTCAGGGTGACTGAAGGAAGCCGGGCCGTCCTGACGAAGCCGCTGCCACTGGAAGGTGGTGCTGAGGGAGcctacctcctcctcctcgttcTCCTGCTCTTTAGCAAAT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72715 True 1978 lncRNA 0.44 2 22198248 22298487

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 133245 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 144160 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 259800 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 276631 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 312807 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 2195828 24494315 ~ 24607305 (-)
mtpap NA coding upstream 2772967 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 3087203 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 3152625 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 3175398 25473885 ~ 25483984 (-)
G53918 NA non-coding downstream 40248 22156989 ~ 22158000 (-)
G53868 ascc1 non-coding downstream 256898 21940602 ~ 21941350 (-)
G53856 NA non-coding downstream 281489 21907685 ~ 21916759 (-)
G53861 dnajb12 non-coding downstream 300668 21893426 ~ 21897580 (-)
G53858 NA non-coding downstream 309619 21886554 ~ 21888629 (-)
G53926 NA non-coding upstream 18907 22317394 ~ 22449619 (-)
G53932 NA non-coding upstream 243683 22542170 ~ 22542524 (-)
G53933 NA non-coding upstream 251586 22550073 ~ 22550295 (-)
G53941 LOC108413004,LOC108273491,LOC107655938 non-coding upstream 404429 22702916 ~ 22707943 (-)
G53945 NA non-coding upstream 414446 22712933 ~ 22768267 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 1378839 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1410630 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 1507826 20621569 ~ 20690422 (-)
G53382 NA other downstream 2347898 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 2627870 19522702 ~ 19570378 (-)
G53996 NA other upstream 792819 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 2042913 24341400 ~ 24351936 (-)
svil NA other upstream 2487764 24786251 ~ 24920590 (-)
jcad NA other upstream 2652125 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 3250863 25549350 ~ 25562139 (-)

Expression


Co-expression Network