G53941 (LOC108413004,LOC108273491,LOC107655938)


Basic Information

Item Value
gene id G53941
gene name LOC108413004,LOC108273491,LOC107655938
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 22702916 ~ 22707943 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72737
CTTTTTGACTGTGATAACTCCCTCCTGACTGGTTGCGTCCGTCACCATGCTAAACACATCCGGCCCGTCGTTCTCCAGAATACTGTACCACATCTCAGCGTTGACCCCGGCGTCAGCGTCATTGGCTTTGATCCTCCCGACGGAAGATCCCACTTCAGCCGACTCGGGTGTGGTGAGGTGGTAGATATCTCGAGAGGGAATATGAGGGAAGCGTGGAGGGCTGTTATTGACATCCAGCAGCGTGATATTGACTGTGGCAGTTCCTGAGAGACCCCCCATCTGTCCTGCCATGTCCTTAGCCTGGATCACCACCTGGTAGTGCTCCCTGTTCTCTCGAATCATATTGGGCAGAGCTGTCCTTATCACACCTGAGATTGAACAAATAATCACAGCTTCTTGATAATGTTCAGAAACACCATATTGGCACAATGACCTTCATA

Function

NR:

description
PREDICTED: cadherin-10-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72737 True 440 lncRNA 0.51 3 22702916 22707943

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 637913 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 648828 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 764468 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 781299 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 817475 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 1786372 24494315 ~ 24607305 (-)
mtpap NA coding upstream 2363511 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 2677747 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 2743169 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 2765942 25473885 ~ 25483984 (-)
G53933 NA non-coding downstream 152621 22550073 ~ 22550295 (-)
G53932 NA non-coding downstream 160392 22542170 ~ 22542524 (-)
G53926 NA non-coding downstream 253297 22317394 ~ 22449619 (-)
G53924 NA non-coding downstream 404429 22198248 ~ 22298487 (-)
G53918 NA non-coding downstream 544916 22156989 ~ 22158000 (-)
G53945 NA non-coding upstream 4990 22712933 ~ 22768267 (-)
LOC111192635 NA non-coding upstream 59107 22767050 ~ 22768006 (-)
G53961 NA non-coding upstream 61526 22769469 ~ 22854274 (-)
LOC111192727 NA non-coding upstream 138733 22846676 ~ 22847337 (-)
G53976 NA non-coding upstream 150448 22858391 ~ 22885934 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 1883507 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 1915298 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 2012494 20621569 ~ 20690422 (-)
G53382 NA other downstream 2852566 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 3132538 19522702 ~ 19570378 (-)
G53996 NA other upstream 383363 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 1633457 24341400 ~ 24351936 (-)
svil NA other upstream 2078308 24786251 ~ 24920590 (-)
jcad NA other upstream 2242669 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 2841407 25549350 ~ 25562139 (-)

Expression


Co-expression Network