G53976


Basic Information

Item Value
gene id G53976
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 22858391 ~ 22885934 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72778
TCCTGAACAATAGCCCCATGATCATTCTCCTGGCTCCCTAGAAGACTTACGATTActgtgtcatccgcaaactttaAAATGTGTCTATTactgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctcctggaagtcccgaatactgattactggcactataaaggtgcacgccaaacagactaccacgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagtttactttgtgtatgaccttgctttttgtttctcgacgccgattcttgcctctgcctttgatattggattgtttgtgtatgacctggactgtactttcaccaccgcctcttggattatctctgatactggattgtttgtgtatgaactctggactgtctctcgtttatggtatggttttgtcttcattgctctgtctactggtgattacccttatttctgtatcgaccctgattacatctgtttattattataataaacatactttgtttttatcagtatctgcgcttgtctgctattctgttctgaccatgacacaCA
>TU72779
TCCTGAACAATAGCCCCATGATCATTCTCCTGGCTCCCTAGAAGACTTACGATTActgtgtcatccgcaaactttaAAATGTGTCTATTactgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctcctggaagtcccgaatactgattactggcactataaaggtgcacgccaaacagactaccacgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagtttactttgtgtatgaccttgctttttgtttctcgacgccgattcttgcctctgcctttgatattggattgtttgtgtatgacctggactgtactttcaccaccgcctcttggattatctctgatactggattgtttgtgtatgaactctggactgtctctcgtttatggtatggttttgtcttcattgctctgtctactggtgattacccttatttctgtatcgaccctgattacatctgtttattattataataaacatactttgtttttatcagtatctgcgcttgtctgctattctgttctgaccatgacacaCA
>TU72780
TCCTGAACAATAGCCCCATGATCATTCTCCTGGCTCCCTAGAAGACTTACGATTActgtgtcatccgcaaactttaAAATGTGTCTATTactgtcacgtctggtgctgttagctcctctgtcccttccacaccaagctctaacggaggttctcaggttaacaactacactacccagaatgcaccacccgctgacatcacgcactcacctgatcacgtgacacctcacctgcttcctcctggaagtcccgaatactgattactggcactataaaggtgcacgccaaacagactaccacgccgcgtattgtaggttatcctcgtacaaagcgttacttatctcttgtctcagtttactttgtgtatgaccttgctttttgtttctcgacgccgattcttgcctctgcctttgatattggattgtttgtgtatgacctggactgtactttcaccaccgcctcttggattatctctgatactggattgtttgtgtatgaactctggactgtctctcgtttatggtatggttttgtcttcattgctctgtctactggtgattacccttatttctgtatcgaccctgattacatctgtttattattataataaacatactttgtttttatcagtatctgcgcttgtctgctattctgttctgaccatgacacaCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72778 True 669 lncRNA 0.44 3 22858391 22885934
TU72779 False 669 lncRNA 0.44 3 22858391 22885934
TU72780 False 669 lncRNA 0.44 3 22858391 22885934

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 793388 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 804303 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 919943 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 936774 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 972950 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 1608381 24494315 ~ 24607305 (-)
mtpap NA coding upstream 2185520 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 2499756 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 2565178 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 2587951 25473885 ~ 25483984 (-)
G53961 NA non-coding downstream 4117 22769469 ~ 22854274 (-)
LOC111192727 NA non-coding downstream 11054 22846676 ~ 22847337 (-)
G53945 NA non-coding downstream 90124 22712933 ~ 22768267 (-)
LOC111192635 NA non-coding downstream 90385 22767050 ~ 22768006 (-)
G53941 LOC108413004,LOC108273491,LOC107655938 non-coding downstream 150448 22702916 ~ 22707943 (-)
G53980 NA non-coding upstream 21892 22907826 ~ 22908049 (-)
G53982 NA non-coding upstream 57836 22943770 ~ 22943981 (-)
G53986 NA non-coding upstream 78067 22964001 ~ 22971704 (-)
LOC111192637 NA non-coding upstream 177970 23063904 ~ 23255571 (-)
G53999 NA non-coding upstream 241780 23127714 ~ 23128114 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 2038982 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 2070773 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 2167969 20621569 ~ 20690422 (-)
G53382 NA other downstream 3008041 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 3288013 19522702 ~ 19570378 (-)
G53996 NA other upstream 205372 23091306 ~ 23091975 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 1455466 24341400 ~ 24351936 (-)
svil NA other upstream 1900317 24786251 ~ 24920590 (-)
jcad NA other upstream 2064678 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 2663416 25549350 ~ 25562139 (-)

Expression


Co-expression Network