G53996


Basic Information

Item Value
gene id G53996
gene name NA
gene type unknown
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23091306 ~ 23091975 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72809
cgactactgcaatgccgtactaactggcctcccggcctgtgtagtaaaaccactacagatgatccagaacgcagcagcacgtttggtcttcaaccagccaaaacgggcacatgtcactccgctgctcattgagctccactggctaccggttgctgctcgcatcaaattcaaagctcttacaatcgcctacaaggtgatgacagaacaggctccttcctacctgcactcactcctgaaggcttacgctacctcccggctgctgcgctcctccaatgaacgtcgcctcgctttgccaaacaaacattcacacaaagcaatccagactgttctcatacagagttccccaatggtggaacaaactaccttccactaccagatcaggagaatctctcactatctttaataaactcctgaagacagagctcttcaaagagcacttactctcctaacacctctaactaactaactaattctaacctcatctccttcttcctcttctctactcctctatcccattatttccctctgacctccttaaggccctatctatagatgctttatttttaacttctattatttttgtacttaacctcttctattatttgcacttcaatattgtaagtcgctttggacaaaagcgtctgccaaatgtaatgtaatgtaatgtaat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72809 True 670 TUCP 0.45 1 23091306 23091975

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 1026303 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 1037218 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 1152858 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 1169689 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 1205865 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 1402340 24494315 ~ 24607305 (-)
mtpap NA coding upstream 1979479 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 2293715 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 2359137 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 2381910 25473885 ~ 25483984 (-)
G53986 NA non-coding downstream 119602 22964001 ~ 22971704 (-)
G53982 NA non-coding downstream 147325 22943770 ~ 22943981 (-)
G53980 NA non-coding downstream 183257 22907826 ~ 22908049 (-)
G53976 NA non-coding downstream 205372 22858391 ~ 22885934 (-)
G53977 NA non-coding downstream 217388 22867904 ~ 22873918 (-)
G53999 NA non-coding upstream 35739 23127714 ~ 23128114 (-)
G54021 LOC108429368 non-coding upstream 184859 23276834 ~ 23277253 (-)
G54027 LOC100695194,LOC101477368,LOC108429368,LOC108273705 non-coding upstream 230714 23322689 ~ 23322999 (-)
G54028 NA non-coding upstream 290747 23382722 ~ 23383118 (-)
G54029 LOC108429368,LOC107571188,LOC107654548,LOC107753275,LOC107653103,LOC107718535,LOC107582197 non-coding upstream 304838 23396813 ~ 23397047 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 2271897 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 2303688 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 2400884 20621569 ~ 20690422 (-)
G53382 NA other downstream 3240956 19849950 ~ 19850350 (-)
LOC103025665 glud1b,LOC108430434,LOC107698813,LOC107700126,LOC107739271,LOC107550058,LOC107749346 other downstream 3520928 19522702 ~ 19570378 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 1249425 24341400 ~ 24351936 (-)
svil NA other upstream 1694276 24786251 ~ 24920590 (-)
jcad NA other upstream 1858637 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 2457375 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 3466431 26558406 ~ 26569939 (-)

Expression


Co-expression Network