G54021 (LOC108429368)


Basic Information

Item Value
gene id G54021
gene name LOC108429368
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23276834 ~ 23277253 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72838
CCCATGTACTCCTCCAGCACGAAGAACTGGTTCCACACCCATCCCCTCTTGACTCTCTGGAAGCCCCCCGACCCTCCTCTGTGGCCTGCGGCGAGCATGCCGGCCGGGCTACGGGGCCAGTCGTGCCCCGGCCTGTTGTGGGGCTGAGCTAGGGGCAGCGTGTGGAGAGGAGCCGGAGAGCTCTGCACGAAGAGGAAGCACAGGAACAGCAGCAGACAGTTCCCCTTCAGCATTGGGCGGTCTGAGGCGGCGCCGTTTCCGTCAAAGTCCAGAGAAGGGTGGAGGATGAAGACCAGAGAGCCAGGGTACCAGAAGAAGAGCCTGAAAACTGAGGCCTGGGAGAGGAGAGGGGGTGAAGGAGGCACCAGGTAAGGGCCCACTCAGAGCCTGGCGCTCCTCAGCTCCTCTTGCTTGCGGTAC

Function

NR:

description
PREDICTED: cadherin-12-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72838 True 420 lncRNA 0.63 1 23276834 23277253

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 1211831 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 1222746 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 1338386 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 1355217 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 1391393 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 1217062 24494315 ~ 24607305 (-)
mtpap NA coding upstream 1794201 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 2108437 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 2173859 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 2196632 25473885 ~ 25483984 (-)
LOC111192637 NA non-coding downstream 21263 23063904 ~ 23255571 (-)
G53999 NA non-coding downstream 148720 23127714 ~ 23128114 (-)
G53986 NA non-coding downstream 305130 22964001 ~ 22971704 (-)
G53982 NA non-coding downstream 332853 22943770 ~ 22943981 (-)
G53980 NA non-coding downstream 368785 22907826 ~ 22908049 (-)
G54027 LOC100695194,LOC101477368,LOC108429368,LOC108273705 non-coding upstream 45436 23322689 ~ 23322999 (-)
G54028 NA non-coding upstream 105469 23382722 ~ 23383118 (-)
G54029 LOC108429368,LOC107571188,LOC107654548,LOC107753275,LOC107653103,LOC107718535,LOC107582197 non-coding upstream 119560 23396813 ~ 23397047 (-)
G54031 NA non-coding upstream 156770 23434023 ~ 23434272 (-)
G54032 LOC107753275,LOC108429368,LOC107654548,LOC107653103,LOC107718535,LOC107582197 non-coding upstream 164197 23441450 ~ 23443066 (-)
G53996 NA other downstream 184859 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 2457425 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 2489216 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 2586412 20621569 ~ 20690422 (-)
G53382 NA other downstream 3426484 19849950 ~ 19850350 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 1064147 24341400 ~ 24351936 (-)
svil NA other upstream 1508998 24786251 ~ 24920590 (-)
jcad NA other upstream 1673359 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 2272097 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 3281153 26558406 ~ 26569939 (-)

Expression


Co-expression Network