G54027 (LOC100695194,LOC101477368,LOC108429368,LOC108273705)


Basic Information

Item Value
gene id G54027
gene name LOC100695194,LOC101477368,LOC108429368,LOC108273705
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23322689 ~ 23322999 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72844
CGGCATGTCCTTACCCACAGGAGACATCTCGGGGACACTAGCGGTGTAAGGGCCCTCCAGAAACTTTGGCTCGTTGTCGTTGATGTCCTGCACCTTGATGACGAACTCGGACTCGGGCTCCAGGGGCCGGTTGGTGTCCATGTCCACAGCCTGGGCTCGGAGTGTGTAATAAGGCTTCTCCTCCCTGTCTAGGCTGCGTAAGGCATGAATGTCTCCGGTGGTCTGGTCGATGGTGAAGATGGTACCGGCCCCCTCCCCCGACAGAGTGTACTTCACCGCACTGTCCCCTTTATCCAGATCTGTGTGCAGCT

Function

NR:

description
PREDICTED: cadherin-12

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU72844 True 311 lncRNA 0.58 1 23322689 23322999

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 1257686 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 1268601 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 1384241 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 1401072 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 1437248 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 1171316 24494315 ~ 24607305 (-)
mtpap NA coding upstream 1748455 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 2062691 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 2128113 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 2150886 25473885 ~ 25483984 (-)
G54021 LOC108429368 non-coding downstream 45436 23276834 ~ 23277253 (-)
LOC111192637 NA non-coding downstream 67118 23063904 ~ 23255571 (-)
G53999 NA non-coding downstream 194575 23127714 ~ 23128114 (-)
G53986 NA non-coding downstream 350985 22964001 ~ 22971704 (-)
G53982 NA non-coding downstream 378708 22943770 ~ 22943981 (-)
G54028 NA non-coding upstream 59723 23382722 ~ 23383118 (-)
G54029 LOC108429368,LOC107571188,LOC107654548,LOC107753275,LOC107653103,LOC107718535,LOC107582197 non-coding upstream 73814 23396813 ~ 23397047 (-)
G54031 NA non-coding upstream 111024 23434023 ~ 23434272 (-)
G54032 LOC107753275,LOC108429368,LOC107654548,LOC107653103,LOC107718535,LOC107582197 non-coding upstream 118451 23441450 ~ 23443066 (-)
G54041 NA non-coding upstream 205136 23528135 ~ 23528974 (-)
G53996 NA other downstream 230714 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 2503280 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 2535071 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 2632267 20621569 ~ 20690422 (-)
G53382 NA other downstream 3472339 19849950 ~ 19850350 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 1018401 24341400 ~ 24351936 (-)
svil NA other upstream 1463252 24786251 ~ 24920590 (-)
jcad NA other upstream 1627613 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 2226351 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 3235407 26558406 ~ 26569939 (-)

Expression


Co-expression Network