G54042


Basic Information

Item Value
gene id G54042
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035902.1
NCBI id CM008305.1
chromosome length 52532229
location 23533671 ~ 23534022 (-)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU72860
tggagttagccattagcttagcgcGGACTCCGGCTCTCTTACCGCGCTTTCGGCTCCTCGCGCAACGCTTGCGGAGAGACCTCTTCCGGCTAGCAGGCTCAGGAAATGCCGCGGATCTTAGCAGGCCTAGCGCGCGTAGCTCCGCTCGTAGACCgtctgtaagtacagatttttgttgattttgcaggtctagcagggtctgtcggtcgtaagttgttcccatagcgaacttttgcatgattgcgagttcagatcggattatttacacagaaaaacaaacaaaagcaccgtGTTTTGCTTCCGGAGTGGCCGCTGCGACTGCTCGCGCCGCCGACAGGAAGTGCACATGTTA

Function

GO: NA

KEGG:

id description
ko00310 Lysine degradation

RNA

RNA id representative length rna type GC content exon number start site end site
TU72860 True 352 lncRNA 0.54 1 23533671 23534022

Neighbor

gene id symbol gene type direction distance location
LOC103023701 LOC103023701,LOC108429359,LOC107597744,LOC101481087,LOC106560865 coding downstream 1468668 22056973 ~ 22065003 (-)
LOC103023380 sar1aa,sar1b,LOC103023380,LOC108429350,LOC107659671,LOC105903360,LOC103362473 coding downstream 1479583 22046496 ~ 22054088 (-)
anapc16 anapc16,cj104 coding downstream 1595223 21933269 ~ 21938448 (-)
ddit4 ddit4 coding downstream 1612054 21919529 ~ 21921617 (-)
narf narf,LOC107581643 coding downstream 1648230 21873489 ~ 21885441 (-)
zeb1 zeb1 coding upstream 960293 24494315 ~ 24607305 (-)
mtpap NA coding upstream 1537432 25071454 ~ 25099104 (-)
ppic ppic,LOC107704600,LOC107713556,LOC107566397,LOC107726227,LOC100333141 coding upstream 1851668 25385690 ~ 25390707 (-)
cep120 cep120,zgc:163014,LOC107712640 coding upstream 1917090 25451112 ~ 25471966 (-)
LOC103046226 znf608 coding upstream 1939863 25473885 ~ 25483984 (-)
G54041 NA non-coding downstream 4697 23528135 ~ 23528974 (-)
G54032 LOC107753275,LOC108429368,LOC107654548,LOC107653103,LOC107718535,LOC107582197 non-coding downstream 90605 23441450 ~ 23443066 (-)
G54031 NA non-coding downstream 99399 23434023 ~ 23434272 (-)
G54029 LOC108429368,LOC107571188,LOC107654548,LOC107753275,LOC107653103,LOC107718535,LOC107582197 non-coding downstream 136624 23396813 ~ 23397047 (-)
G54028 NA non-coding downstream 150553 23382722 ~ 23383118 (-)
G54047 NA non-coding upstream 2802 23536824 ~ 23537058 (-)
G54053 NA non-coding upstream 23478 23557500 ~ 23562932 (-)
G54124 NA non-coding upstream 620581 24154603 ~ 24158935 (-)
G54188 NA non-coding upstream 738969 24272991 ~ 24290777 (-)
G54202 NA non-coding upstream 797586 24331608 ~ 24332070 (-)
G53996 NA other downstream 441696 23091306 ~ 23091975 (-)
G53607 fbxo11,fbxo11b,fbxo11a,LOC107749363,LOC107550041,LOC107728720 other downstream 2714262 20817839 ~ 20819409 (-)
G53598 msh2,LOC107728724,LOC107673650,LOC107582784,LOC107550043,LOC107749362,LOC107698830 other downstream 2746053 20783738 ~ 20787618 (-)
G53562 LOC107396020,LOC107670363,LOC105896953,LOC102778633 other downstream 2843249 20621569 ~ 20690422 (-)
G53382 NA other downstream 3683321 19849950 ~ 19850350 (-)
G54205 kif5b,kif5bb,LOC108430866,LOC107753262 other upstream 807378 24341400 ~ 24351936 (-)
svil NA other upstream 1252229 24786251 ~ 24920590 (-)
jcad NA other upstream 1416590 24950612 ~ 24998120 (-)
fam240a LOC108441996 other upstream 2015328 25549350 ~ 25562139 (-)
LOC103042298 slc35d2 other upstream 3024384 26558406 ~ 26569939 (-)

Expression


Co-expression Network